miRNA display CGI

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ID	strand	start position	length	sRNA loop score	core MFE.	NP ORF	Known viral miRNA	Match to own genomic region#	Target prediction with RNAhybrid
27375	-	29184	87	25	-36.3			5' arm      3' arm
27346	+	18771	88	24.5	-23.7	YP_006601		5' arm      3' arm
27372	-	23038	90	23.5	-22.3	YP_006601		5' arm      3' arm
27389	-	50237	89	23	-26.8	YP_006642		5' arm      3' arm
27350	+	26735	82	23	-24.29	YP_006604		5' arm      3' arm
27355	+	35727	90	22.5	-23.3	YP_006615		5' arm      3' arm
27388	-	50047	87	22	-20.1	YP_006641		5' arm      3' arm
27374	-	24848	90	21.5	-20.5	YP_006601		5' arm      3' arm
27351	+	30084	90	21.5	-20.8	YP_006606		5' arm      3' arm
27337	+	7157	89	21.5	-20.4	YP_006590		5' arm      3' arm
27368	-	17192	88	21.5	-21.5	YP_006601		5' arm      3' arm
27377	-	32762	87	21.5	-24.3			5' arm      3' arm
27371	-	21022	90	21	-19.7	YP_006601		5' arm      3' arm
27348	+	22745	90	21	-21.8	YP_006601		5' arm      3' arm
27345	+	18621	89	21	-22.7	YP_006601		5' arm      3' arm
27344	+	17316	85	21	-21.7	YP_006601		5' arm      3' arm
27341	+	13897	87	21	-25.8	YP_006598		5' arm      3' arm
27338	+	8086	83	21	-29.5	YP_006592		5' arm      3' arm
27385	-	47525	90	21	-21.5	YP_006634		5' arm      3' arm
27376	-	31321	90	21	-25			5' arm      3' arm

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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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