miRNA display CGI

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ID	strand	start position	length	sRNA loop score	core MFE.	NP ORF	Known viral miRNA	Match to own genomic region#	Target prediction with RNAhybrid
27338	+	8086	83	21	-29.5	YP_006592		5' arm      3' arm
27339	+	9244	81	19	-25.3	YP_006595		5' arm      3' arm
27365	-	9964	90	20	-23.1	YP_006595		5' arm      3' arm
27340	+	10873	87	20.5	-20	YP_006595		5' arm      3' arm
27366	-	13399	88	19	-22.9	YP_006597		5' arm      3' arm
27341	+	13897	87	21	-25.8	YP_006598		5' arm      3' arm
27368	-	17192	88	21.5	-21.5	YP_006601		5' arm      3' arm
27367	-	16961	87	20	-23.5	YP_006601		5' arm      3' arm
27369	-	19293	90	21	-20.8	YP_006601		5' arm      3' arm
27349	+	25356	88	19.5	-20.5	YP_006601		5' arm      3' arm
27370	-	20565	90	19	-24.2	YP_006601		5' arm      3' arm
27344	+	17316	85	21	-21.7	YP_006601		5' arm      3' arm
27342	+	16367	88	19.5	-24.2	YP_006601		5' arm      3' arm
27343	+	16544	89	19	-27.2	YP_006601		5' arm      3' arm
27371	-	21022	90	21	-19.7	YP_006601		5' arm      3' arm
27373	-	24195	90	20.5	-24.2	YP_006601		5' arm      3' arm
27374	-	24848	90	21.5	-20.5	YP_006601		5' arm      3' arm
27346	+	18771	88	24.5	-23.7	YP_006601		5' arm      3' arm
27345	+	18621	89	21	-22.7	YP_006601		5' arm      3' arm
27347	+	22435	88	20.5	-20.5	YP_006601		5' arm      3' arm

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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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