miRNA display CGI

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ID	strand	start position	length	sRNA loop score	core MFE.	NP ORF	Known viral miRNA	Match to own genomic region#	Target prediction with RNAhybrid
27342	+	16367	88	19.5	-24.2	YP_006601		5' arm      3' arm
27373	-	24195	90	20.5	-24.2	YP_006601		5' arm      3' arm
27334	+	3148	90	19.5	-23.9	YP_006584		5' arm      3' arm
27357	+	38380	88	19.5	-23.7			5' arm      3' arm
27346	+	18771	88	24.5	-23.7	YP_006601		5' arm      3' arm
27335	+	4423	90	20.5	-23.5	YP_006585		5' arm      3' arm
27367	-	16961	87	20	-23.5	YP_006601		5' arm      3' arm
27355	+	35727	90	22.5	-23.3	YP_006615		5' arm      3' arm
27379	-	36115	90	19	-23.3	YP_006615		5' arm      3' arm
27365	-	9964	90	20	-23.1	YP_006595		5' arm      3' arm
27366	-	13399	88	19	-22.9	YP_006597		5' arm      3' arm
27364	-	9429	89	20.5	-22.8			5' arm      3' arm
27345	+	18621	89	21	-22.7	YP_006601		5' arm      3' arm
27362	-	6622	89	19.5	-22.3	YP_006588		5' arm      3' arm
27372	-	23038	90	23.5	-22.3	YP_006601		5' arm      3' arm
27378	-	35343	90	19	-21.86	YP_006615		5' arm      3' arm
27348	+	22745	90	21	-21.8	YP_006601		5' arm      3' arm
27359	-	4043	86	20	-21.7	YP_006585		5' arm      3' arm
27344	+	17316	85	21	-21.7	YP_006601		5' arm      3' arm
27368	-	17192	88	21.5	-21.5	YP_006601		5' arm      3' arm

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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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