miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
46402086 NC_005857.1 Bacteriophage phiKO2 virion

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
27333 + 2580 88 19.5 -30.3 YP_006584 5' arm      3' arm
27334 + 3148 90 19.5 -23.9 YP_006584 5' arm      3' arm
27380 - 38226 90 20 -20 YP_006615 5' arm      3' arm
27367 - 16961 87 20 -23.5 YP_006601 5' arm      3' arm
27360 - 5121 88 20 -26.7 YP_006586 5' arm      3' arm
27359 - 4043 86 20 -21.7 YP_006585 5' arm      3' arm
27354 + 32664 90 20 -24.39 5' arm      3' arm
27365 - 9964 90 20 -23.1 YP_006595 5' arm      3' arm
27336 + 6844 90 20 -25.6 YP_006589 5' arm      3' arm
27352 + 30660 89 20 -20.2 YP_006606 5' arm      3' arm
27340 + 10873 87 20.5 -20 YP_006595 5' arm      3' arm
27335 + 4423 90 20.5 -23.5 YP_006585 5' arm      3' arm
27373 - 24195 90 20.5 -24.2 YP_006601 5' arm      3' arm
27356 + 36936 90 20.5 -27.1 YP_006615 5' arm      3' arm
27347 + 22435 88 20.5 -20.5 YP_006601 5' arm      3' arm
27364 - 9429 89 20.5 -22.8 5' arm      3' arm
27371 - 21022 90 21 -19.7 YP_006601 5' arm      3' arm
27338 + 8086 83 21 -29.5 YP_006592 5' arm      3' arm
27385 - 47525 90 21 -21.5 YP_006634 5' arm      3' arm
27369 - 19293 90 21 -20.8 YP_006601 5' arm      3' arm
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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.