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| GenBank Identifier | RefSeq Acc. | Name |
| 11038431 | NC_001875.2 | Orgyia pseudotsugata multicapsid nucleopolyhedrovirus |
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| ID | strand | start position | length |
sRNA loop score
|
core MFE. | NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
| 6817 | + | 75467 | 89 | 30 | -28.4 | NP_046248 | 5' arm 3' arm | ||
| 6816 | + | 75335 | 89 | 30 | -33.4 | NP_046248 | 5' arm 3' arm | ||
| 6794 | + | 61927 | 90 | 28.5 | -36.5 | NP_046229 | 5' arm 3' arm | ||
| 6981 | - | 88437 | 83 | 27 | -23.1 | NP_046261 | 5' arm 3' arm | ||
| 6838 | + | 94415 | 88 | 26 | -22.3 | NP_046270 | 5' arm 3' arm | ||
| 6998 | - | 101733 | 90 | 26 | -22.3 | 5' arm 3' arm | |||
| 6997 | - | 101601 | 90 | 26 | -22.6 | 5' arm 3' arm | |||
| 6995 | - | 101337 | 90 | 26 | -22.6 | 5' arm 3' arm | |||
| 6996 | - | 101469 | 90 | 26 | -22.6 | 5' arm 3' arm | |||
| 6928 | - | 40790 | 88 | 26 | -28.8 | NP_046206 | 5' arm 3' arm | ||
| 6888 | - | 8866 | 90 | 25.5 | -24.9 | NP_046168 | 5' arm 3' arm | ||
| 6964 | - | 73890 | 88 | 25 | -26.3 | NP_046247 | 5' arm 3' arm | ||
| 7027 | - | 130701 | 88 | 25 | -22.3 | 5' arm 3' arm | |||
| 6915 | - | 33049 | 90 | 25 | -25.9 | NP_046196 | 5' arm 3' arm | ||
| 6900 | - | 20742 | 89 | 25 | -29.6 | NP_046180 | 5' arm 3' arm | ||
| 6984 | - | 90409 | 89 | 24.5 | -25.1 | NP_046263 | 5' arm 3' arm | ||
| 6749 | + | 26446 | 90 | 24.5 | -24.7 | NP_046188 | 5' arm 3' arm | ||
| 6804 | + | 69493 | 88 | 24.5 | -26.7 | NP_046242 | 5' arm 3' arm | ||
| 6942 | - | 52130 | 89 | 24.5 | -22.2 | NP_046221 | 5' arm 3' arm | ||
| 7019 | - | 126479 | 90 | 24.5 | -28 | NP_046303 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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