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| GenBank Identifier | RefSeq Acc. | Name |
| 11038431 | NC_001875.2 | Orgyia pseudotsugata multicapsid nucleopolyhedrovirus |
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| ID | strand | start position | length |
sRNA loop score
|
core MFE. | NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
| 7019 | - | 126479 | 90 | 24.5 | -28 | NP_046303 | 5' arm 3' arm | ||
| 6749 | + | 26446 | 90 | 24.5 | -24.7 | NP_046188 | 5' arm 3' arm | ||
| 6984 | - | 90409 | 89 | 24.5 | -25.1 | NP_046263 | 5' arm 3' arm | ||
| 6859 | + | 114844 | 90 | 24.5 | -21.2 | 5' arm 3' arm | |||
| 6735 | + | 11880 | 89 | 24 | -24.4 | NP_046171 | 5' arm 3' arm | ||
| 6842 | + | 97850 | 87 | 24 | -30 | NP_046275 | 5' arm 3' arm | ||
| 6989 | - | 97849 | 90 | 24 | -23.3 | NP_046275 | 5' arm 3' arm | ||
| 6734 | + | 10961 | 89 | 24 | -31.9 | NP_046170 | 5' arm 3' arm | ||
| 6795 | + | 62522 | 89 | 24 | -25.8 | NP_046230 | 5' arm 3' arm | ||
| 6781 | + | 50333 | 89 | 24 | -19.4 | NP_046219 | 5' arm 3' arm | ||
| 6759 | + | 33746 | 90 | 24 | -24.5 | NP_046197 | 5' arm 3' arm | ||
| 6856 | + | 113569 | 90 | 24 | -19.8 | NP_046290 | 5' arm 3' arm | ||
| 6818 | + | 76728 | 86 | 23.5 | -24.1 | NP_046250 | 5' arm 3' arm | ||
| 6936 | - | 45733 | 88 | 23.5 | -27.6 | NP_046210 | 5' arm 3' arm | ||
| 6944 | - | 52660 | 87 | 23.5 | -19.5 | NP_046221 | 5' arm 3' arm | ||
| 6752 | + | 26967 | 90 | 23.5 | -23.9 | NP_046188 | 5' arm 3' arm | ||
| 7020 | - | 128791 | 85 | 23.5 | -21.9 | NP_046307 | 5' arm 3' arm | ||
| 6831 | + | 90689 | 87 | 23.5 | -27.1 | NP_046264 | 5' arm 3' arm | ||
| 6962 | - | 70977 | 89 | 23.5 | -23.9 | 5' arm 3' arm | |||
| 7026 | - | 130539 | 88 | 23.5 | -22.3 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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