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| GenBank Identifier | RefSeq Acc. | Name |
| 11038431 | NC_001875.2 | Orgyia pseudotsugata multicapsid nucleopolyhedrovirus |
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| ID | strand | start position | length | sRNA loop score |
core MFE.
|
NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
| 6754 | + | 29089 | 89 | 20.5 | -30.7 | NP_046191 | 5' arm 3' arm | ||
| 6967 | - | 74374 | 88 | 23 | -30.5 | NP_046247 | 5' arm 3' arm | ||
| 6847 | + | 100218 | 88 | 23 | -30.4 | NP_046278 | 5' arm 3' arm | ||
| 6849 | + | 102062 | 87 | 19 | -30.2 | NP_046280 | 5' arm 3' arm | ||
| 6842 | + | 97850 | 87 | 24 | -30 | NP_046275 | 5' arm 3' arm | ||
| 6788 | + | 57947 | 90 | 22.5 | -29.9 | NP_046227 | 5' arm 3' arm | ||
| 6844 | + | 98348 | 88 | 19 | -29.7 | NP_046275 | 5' arm 3' arm | ||
| 6982 | - | 89015 | 87 | 21.5 | -29.6 | NP_046261 | 5' arm 3' arm | ||
| 6900 | - | 20742 | 89 | 25 | -29.6 | NP_046180 | 5' arm 3' arm | ||
| 6766 | + | 39246 | 88 | 23 | -29.6 | NP_046205 | 5' arm 3' arm | ||
| 6979 | - | 87199 | 85 | 21 | -29.5 | NP_046260 | 5' arm 3' arm | ||
| 6787 | + | 57220 | 90 | 20.5 | -29.2 | NP_046226 | 5' arm 3' arm | ||
| 6951 | - | 62013 | 89 | 21 | -29.1 | 5' arm 3' arm | |||
| 6827 | + | 87114 | 90 | 20.5 | -29.1 | NP_046260 | 5' arm 3' arm | ||
| 6927 | - | 40078 | 89 | 19.5 | -29 | NP_046206 | 5' arm 3' arm | ||
| 6987 | - | 96981 | 90 | 23 | -28.8 | NP_046274 | 5' arm 3' arm | ||
| 6928 | - | 40790 | 88 | 26 | -28.8 | NP_046206 | 5' arm 3' arm | ||
| 6768 | + | 40266 | 89 | 19 | -28.7 | NP_046206 | 5' arm 3' arm | ||
| 6935 | - | 45588 | 89 | 21 | -28.6 | NP_046210 | 5' arm 3' arm | ||
| 6797 | + | 64801 | 89 | 23 | -28.6 | NP_046236 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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