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| GenBank Identifier | RefSeq Acc. | Name |
| 11038431 | NC_001875.2 | Orgyia pseudotsugata multicapsid nucleopolyhedrovirus |
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| ID | strand | start position | length |
sRNA loop score
|
core MFE. | NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
| 6849 | + | 102062 | 87 | 19 | -30.2 | NP_046280 | 5' arm 3' arm | ||
| 6883 | - | 4514 | 89 | 19 | -24.8 | NP_046162 | 5' arm 3' arm | ||
| 6943 | - | 52522 | 90 | 19 | -19.4 | NP_046221 | 5' arm 3' arm | ||
| 6815 | + | 74957 | 86 | 19 | -20.9 | NP_046247 | 5' arm 3' arm | ||
| 6768 | + | 40266 | 89 | 19 | -28.7 | NP_046206 | 5' arm 3' arm | ||
| 6932 | - | 43214 | 87 | 19 | -24.5 | NP_046210 | 5' arm 3' arm | ||
| 6882 | - | 3891 | 86 | 19 | -24.9 | NP_046161 | 5' arm 3' arm | ||
| 6780 | + | 49874 | 90 | 19 | -26.3 | NP_046218 | 5' arm 3' arm | ||
| 6801 | + | 66775 | 88 | 19 | -24.3 | NP_046239 | 5' arm 3' arm | ||
| 6902 | - | 23188 | 89 | 19 | -22.1 | NP_046183 | 5' arm 3' arm | ||
| 7028 | - | 131656 | 89 | 19 | -23 | NP_046308 | 5' arm 3' arm | ||
| 6952 | - | 62393 | 89 | 19 | -21.6 | NP_046230 | 5' arm 3' arm | ||
| 6860 | + | 115863 | 85 | 19 | -32.3 | NP_046292 | 5' arm 3' arm | ||
| 6961 | - | 69552 | 87 | 19 | -24.6 | NP_046242 | 5' arm 3' arm | ||
| 6864 | + | 118387 | 90 | 19.5 | -21.2 | NP_046294 | 5' arm 3' arm | ||
| 6866 | + | 122008 | 87 | 19.5 | -24 | NP_046300 | 5' arm 3' arm | ||
| 6750 | + | 26548 | 89 | 19.5 | -22.1 | NP_046188 | 5' arm 3' arm | ||
| 6776 | + | 43764 | 90 | 19.5 | -23.4 | NP_046210 | 5' arm 3' arm | ||
| 6958 | - | 66386 | 88 | 19.5 | -20.6 | NP_046239 | 5' arm 3' arm | ||
| 6811 | + | 73368 | 89 | 19.5 | -21.7 | NP_046246 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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