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| GenBank Identifier | RefSeq Acc. | Name |
| 11038431 | NC_001875.2 | Orgyia pseudotsugata multicapsid nucleopolyhedrovirus |
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| ID | strand | start position | length |
sRNA loop score
|
core MFE. | NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
| 6927 | - | 40078 | 89 | 19.5 | -29 | NP_046206 | 5' arm 3' arm | ||
| 6992 | - | 98881 | 90 | 19.5 | -23.4 | NP_046275 | 5' arm 3' arm | ||
| 6769 | + | 40489 | 90 | 19.5 | -22.2 | NP_046206 | 5' arm 3' arm | ||
| 6903 | - | 23750 | 90 | 19.5 | -23.6 | NP_046185 | 5' arm 3' arm | ||
| 6864 | + | 118387 | 90 | 19.5 | -21.2 | NP_046294 | 5' arm 3' arm | ||
| 6971 | - | 77627 | 89 | 19.5 | -32 | NP_046251 | 5' arm 3' arm | ||
| 6911 | - | 31052 | 82 | 19.5 | -23.9 | NP_046194 | 5' arm 3' arm | ||
| 6925 | - | 39733 | 90 | 19.5 | -25.5 | NP_046206 | 5' arm 3' arm | ||
| 6960 | - | 68969 | 87 | 19.5 | -21.2 | NP_046242 | 5' arm 3' arm | ||
| 6739 | + | 14935 | 90 | 19.5 | -23.9 | NP_046175 | 5' arm 3' arm | ||
| 6811 | + | 73368 | 89 | 19.5 | -21.7 | NP_046246 | 5' arm 3' arm | ||
| 6870 | + | 126406 | 84 | 19.5 | -20.7 | NP_046303 | 5' arm 3' arm | ||
| 6750 | + | 26548 | 89 | 19.5 | -22.1 | NP_046188 | 5' arm 3' arm | ||
| 6963 | - | 71683 | 90 | 19.5 | -21.4 | NP_046244 | 5' arm 3' arm | ||
| 6806 | + | 69844 | 90 | 19.5 | -20.7 | NP_046242 | 5' arm 3' arm | ||
| 7013 | - | 117413 | 88 | 19.5 | -21.6 | NP_046293 | 5' arm 3' arm | ||
| 6947 | - | 54278 | 89 | 19.5 | -19.8 | NP_046225 | 5' arm 3' arm | ||
| 6958 | - | 66386 | 88 | 19.5 | -20.6 | NP_046239 | 5' arm 3' arm | ||
| 6879 | - | 960 | 90 | 19.5 | -24 | NP_046157 | 5' arm 3' arm | ||
| 6939 | - | 48451 | 90 | 19.5 | -20.8 | NP_046214 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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