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| GenBank Identifier | RefSeq Acc. | Name |
| 11038431 | NC_001875.2 | Orgyia pseudotsugata multicapsid nucleopolyhedrovirus |
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| ID | strand | start position | length | sRNA loop score |
core MFE.
|
NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
| 6797 | + | 64801 | 89 | 23 | -28.6 | NP_046236 | 5' arm 3' arm | ||
| 6743 | + | 18140 | 89 | 20 | -28.5 | NP_046177 | 5' arm 3' arm | ||
| 6833 | + | 91496 | 90 | 21 | -28.4 | NP_046265 | 5' arm 3' arm | ||
| 6988 | - | 97710 | 74 | 19 | -28.4 | NP_046275 | 5' arm 3' arm | ||
| 6933 | - | 43845 | 90 | 21.5 | -28.4 | NP_046210 | 5' arm 3' arm | ||
| 6817 | + | 75467 | 89 | 30 | -28.4 | NP_046248 | 5' arm 3' arm | ||
| 6773 | + | 42189 | 89 | 20.5 | -28.3 | NP_046208 | 5' arm 3' arm | ||
| 6836 | + | 92694 | 89 | 23 | -28 | NP_046268 | 5' arm 3' arm | ||
| 7019 | - | 126479 | 90 | 24.5 | -28 | NP_046303 | 5' arm 3' arm | ||
| 6829 | + | 89332 | 90 | 23 | -28 | NP_046262 | 5' arm 3' arm | ||
| 6965 | - | 74017 | 87 | 22 | -27.9 | NP_046247 | 5' arm 3' arm | ||
| 6834 | + | 91745 | 89 | 23 | -27.9 | NP_046265 | 5' arm 3' arm | ||
| 6789 | + | 58795 | 87 | 20 | -27.8 | NP_046227 | 5' arm 3' arm | ||
| 6874 | + | 129648 | 83 | 21 | -27.7 | NP_046307 | 5' arm 3' arm | ||
| 6956 | - | 65809 | 90 | 24.5 | -27.6 | NP_046237 | 5' arm 3' arm | ||
| 6957 | - | 65932 | 90 | 21 | -27.6 | NP_046237 | 5' arm 3' arm | ||
| 6936 | - | 45733 | 88 | 23.5 | -27.6 | NP_046210 | 5' arm 3' arm | ||
| 6822 | + | 79214 | 88 | 22 | -27.4 | NP_046252 | 5' arm 3' arm | ||
| 6830 | + | 89549 | 85 | 21 | -27.3 | NP_046262 | 5' arm 3' arm | ||
| 6808 | + | 72630 | 86 | 22 | -27.3 | NP_046246 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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