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| GenBank Identifier | RefSeq Acc. | Name |
| 11038431 | NC_001875.2 | Orgyia pseudotsugata multicapsid nucleopolyhedrovirus |
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| ID | strand | start position | length | sRNA loop score |
core MFE.
|
NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
| 6958 | - | 66386 | 88 | 19.5 | -20.6 | NP_046239 | 5' arm 3' arm | ||
| 6809 | + | 72887 | 90 | 22.5 | -20.6 | NP_046246 | 5' arm 3' arm | ||
| 6870 | + | 126406 | 84 | 19.5 | -20.7 | NP_046303 | 5' arm 3' arm | ||
| 6806 | + | 69844 | 90 | 19.5 | -20.7 | NP_046242 | 5' arm 3' arm | ||
| 6939 | - | 48451 | 90 | 19.5 | -20.8 | NP_046214 | 5' arm 3' arm | ||
| 6738 | + | 14534 | 81 | 20 | -20.8 | NP_046175 | 5' arm 3' arm | ||
| 6871 | + | 126901 | 89 | 20 | -20.9 | NP_046304 | 5' arm 3' arm | ||
| 6819 | + | 77049 | 90 | 20.5 | -20.9 | NP_046250 | 5' arm 3' arm | ||
| 6815 | + | 74957 | 86 | 19 | -20.9 | NP_046247 | 5' arm 3' arm | ||
| 6777 | + | 44445 | 85 | 21 | -20.9 | NP_046210 | 5' arm 3' arm | ||
| 6890 | - | 9563 | 87 | 21.5 | -20.9 | NP_046169 | 5' arm 3' arm | ||
| 7010 | - | 113516 | 89 | 22.5 | -20.9 | NP_046290 | 5' arm 3' arm | ||
| 6746 | + | 24044 | 89 | 22 | -20.91 | 5' arm 3' arm | |||
| 6905 | - | 29053 | 88 | 23 | -21 | NP_046191 | 5' arm 3' arm | ||
| 6946 | - | 54030 | 90 | 20 | -21 | NP_046224 | 5' arm 3' arm | ||
| 6737 | + | 12964 | 90 | 21 | -21.1 | NP_046173 | 5' arm 3' arm | ||
| 6800 | + | 66602 | 88 | 23.5 | -21.1 | NP_046239 | 5' arm 3' arm | ||
| 6775 | + | 42964 | 86 | 20 | -21.1 | NP_046209 | 5' arm 3' arm | ||
| 6864 | + | 118387 | 90 | 19.5 | -21.2 | NP_046294 | 5' arm 3' arm | ||
| 6960 | - | 68969 | 87 | 19.5 | -21.2 | NP_046242 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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