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| GenBank Identifier | RefSeq Acc. | Name |
| 11038431 | NC_001875.2 | Orgyia pseudotsugata multicapsid nucleopolyhedrovirus |
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| ID | strand | start position | length | sRNA loop score | core MFE. | NP ORF |
Known viral miRNA
|
Match to own genomic region# | Target prediction with RNAhybrid |
| 6733 | + | 7004 | 90 | 21 | -24.5 | NP_046167 | 5' arm 3' arm | ||
| 6731 | + | 5149 | 89 | 21.5 | -20.4 | NP_046164 | 5' arm 3' arm | ||
| 6730 | + | 1752 | 90 | 20.5 | -23.1 | NP_046158 | 5' arm 3' arm | ||
| 6729 | + | 986 | 88 | 20.5 | -27.1 | NP_046158 | 5' arm 3' arm | ||
| 6728 | + | 542 | 89 | 22 | -26.2 | NP_046157 | 5' arm 3' arm | ||
| 6738 | + | 14534 | 81 | 20 | -20.8 | NP_046175 | 5' arm 3' arm | ||
| 6743 | + | 18140 | 89 | 20 | -28.5 | NP_046177 | 5' arm 3' arm | ||
| 6755 | + | 29520 | 79 | 21.5 | -23.2 | NP_046191 | 5' arm 3' arm | ||
| 6756 | + | 30508 | 80 | 22 | -21.6 | 5' arm 3' arm | |||
| 6751 | + | 26800 | 90 | 19 | -23.8 | NP_046188 | 5' arm 3' arm | ||
| 6750 | + | 26548 | 89 | 19.5 | -22.1 | NP_046188 | 5' arm 3' arm | ||
| 6747 | + | 24208 | 88 | 21 | -25.6 | NP_046186 | 5' arm 3' arm | ||
| 6753 | + | 27308 | 87 | 21.5 | -22.9 | NP_046188 | 5' arm 3' arm | ||
| 6746 | + | 24044 | 89 | 22 | -20.91 | 5' arm 3' arm | |||
| 6748 | + | 25964 | 90 | 23 | -22.9 | NP_046188 | 5' arm 3' arm | ||
| 6752 | + | 26967 | 90 | 23.5 | -23.9 | NP_046188 | 5' arm 3' arm | ||
| 6749 | + | 26446 | 90 | 24.5 | -24.7 | NP_046188 | 5' arm 3' arm | ||
| 6745 | + | 19112 | 89 | 19 | -32.2 | NP_046178 | 5' arm 3' arm | ||
| 6744 | + | 18576 | 90 | 23.5 | -23.5 | NP_046177 | 5' arm 3' arm | ||
| 6739 | + | 14935 | 90 | 19.5 | -23.9 | NP_046175 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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