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| GenBank Identifier | RefSeq Acc. | Name |
| 11038431 | NC_001875.2 | Orgyia pseudotsugata multicapsid nucleopolyhedrovirus |
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| ID | strand | start position | length | sRNA loop score |
core MFE.
|
NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
| 6808 | + | 72630 | 86 | 22 | -27.3 | NP_046246 | 5' arm 3' arm | ||
| 6845 | + | 98604 | 89 | 19.5 | -27.24 | NP_046275 | 5' arm 3' arm | ||
| 6917 | - | 33387 | 87 | 19 | -27.2 | NP_046197 | 5' arm 3' arm | ||
| 6831 | + | 90689 | 87 | 23.5 | -27.1 | NP_046264 | 5' arm 3' arm | ||
| 6729 | + | 986 | 88 | 20.5 | -27.1 | NP_046158 | 5' arm 3' arm | ||
| 6914 | - | 32921 | 89 | 20.5 | -27.1 | NP_046196 | 5' arm 3' arm | ||
| 6865 | + | 119117 | 79 | 22.5 | -27 | NP_046295 | 5' arm 3' arm | ||
| 6867 | + | 122794 | 90 | 21.5 | -26.9 | NP_046301 | 5' arm 3' arm | ||
| 6840 | + | 96111 | 81 | 19 | -26.9 | NP_046272 | 5' arm 3' arm | ||
| 6837 | + | 92791 | 90 | 22.5 | -26.9 | 5' arm 3' arm | |||
| 6846 | + | 99396 | 87 | 21 | -26.7 | NP_046277 | 5' arm 3' arm | ||
| 6804 | + | 69493 | 88 | 24.5 | -26.7 | NP_046242 | 5' arm 3' arm | ||
| 6799 | + | 66047 | 86 | 21 | -26.7 | NP_046238 | 5' arm 3' arm | ||
| 6916 | - | 33241 | 90 | 22 | -26.6 | NP_046197 | 5' arm 3' arm | ||
| 6908 | - | 30535 | 90 | 22 | -26.6 | 5' arm 3' arm | |||
| 7007 | - | 111267 | 81 | 20 | -26.5 | NP_046287 | 5' arm 3' arm | ||
| 6764 | + | 37698 | 88 | 21 | -26.5 | NP_046203 | 5' arm 3' arm | ||
| 6922 | - | 37116 | 87 | 22 | -26.4 | NP_046202 | 5' arm 3' arm | ||
| 6964 | - | 73890 | 88 | 25 | -26.3 | NP_046247 | 5' arm 3' arm | ||
| 6780 | + | 49874 | 90 | 19 | -26.3 | NP_046218 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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