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| GenBank Identifier | RefSeq Acc. | Name |
| 11038431 | NC_001875.2 | Orgyia pseudotsugata multicapsid nucleopolyhedrovirus |
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| ID | strand | start position | length | sRNA loop score | core MFE. |
NP ORF
|
Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
| 6895 | - | 17323 | 89 | 19.5 | -22.3 | NP_046177 | 5' arm 3' arm | ||
| 6899 | - | 19735 | 87 | 21 | -23 | NP_046178 | 5' arm 3' arm | ||
| 6745 | + | 19112 | 89 | 19 | -32.2 | NP_046178 | 5' arm 3' arm | ||
| 6900 | - | 20742 | 89 | 25 | -29.6 | NP_046180 | 5' arm 3' arm | ||
| 6902 | - | 23188 | 89 | 19 | -22.1 | NP_046183 | 5' arm 3' arm | ||
| 6901 | - | 22947 | 86 | 20 | -24.4 | NP_046183 | 5' arm 3' arm | ||
| 6903 | - | 23750 | 90 | 19.5 | -23.6 | NP_046185 | 5' arm 3' arm | ||
| 6747 | + | 24208 | 88 | 21 | -25.6 | NP_046186 | 5' arm 3' arm | ||
| 6753 | + | 27308 | 87 | 21.5 | -22.9 | NP_046188 | 5' arm 3' arm | ||
| 6751 | + | 26800 | 90 | 19 | -23.8 | NP_046188 | 5' arm 3' arm | ||
| 6904 | - | 27418 | 89 | 20 | -24 | NP_046188 | 5' arm 3' arm | ||
| 6749 | + | 26446 | 90 | 24.5 | -24.7 | NP_046188 | 5' arm 3' arm | ||
| 6752 | + | 26967 | 90 | 23.5 | -23.9 | NP_046188 | 5' arm 3' arm | ||
| 6750 | + | 26548 | 89 | 19.5 | -22.1 | NP_046188 | 5' arm 3' arm | ||
| 6748 | + | 25964 | 90 | 23 | -22.9 | NP_046188 | 5' arm 3' arm | ||
| 6905 | - | 29053 | 88 | 23 | -21 | NP_046191 | 5' arm 3' arm | ||
| 6906 | - | 29179 | 89 | 20 | -30.7 | NP_046191 | 5' arm 3' arm | ||
| 6754 | + | 29089 | 89 | 20.5 | -30.7 | NP_046191 | 5' arm 3' arm | ||
| 6755 | + | 29520 | 79 | 21.5 | -23.2 | NP_046191 | 5' arm 3' arm | ||
| 6907 | - | 29928 | 90 | 22 | -23.5 | NP_046192 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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