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| GenBank Identifier | RefSeq Acc. | Name |
| 11038431 | NC_001875.2 | Orgyia pseudotsugata multicapsid nucleopolyhedrovirus |
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| ID | strand | start position | length |
sRNA loop score
|
core MFE. | NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
| 6903 | - | 23750 | 90 | 19.5 | -23.6 | NP_046185 | 5' arm 3' arm | ||
| 6959 | - | 68878 | 90 | 20 | -21.9 | NP_046242 | 5' arm 3' arm | ||
| 7011 | - | 113938 | 89 | 20 | -25.5 | NP_046290 | 5' arm 3' arm | ||
| 6835 | + | 92575 | 90 | 20 | -24.7 | NP_046268 | 5' arm 3' arm | ||
| 6762 | + | 36587 | 89 | 20 | -23.8 | NP_046201 | 5' arm 3' arm | ||
| 6999 | - | 102768 | 83 | 20 | -20 | NP_046280 | 5' arm 3' arm | ||
| 6810 | + | 72983 | 89 | 20 | -25.8 | NP_046246 | 5' arm 3' arm | ||
| 6945 | - | 53518 | 88 | 20 | -22.7 | NP_046222 | 5' arm 3' arm | ||
| 6807 | + | 72384 | 88 | 20 | -24.9 | NP_046245 | 5' arm 3' arm | ||
| 7007 | - | 111267 | 81 | 20 | -26.5 | NP_046287 | 5' arm 3' arm | ||
| 6763 | + | 37230 | 90 | 20 | -20 | NP_046202 | 5' arm 3' arm | ||
| 6848 | + | 100334 | 89 | 20 | -23.1 | NP_046278 | 5' arm 3' arm | ||
| 6871 | + | 126901 | 89 | 20 | -20.9 | NP_046304 | 5' arm 3' arm | ||
| 6946 | - | 54030 | 90 | 20 | -21 | NP_046224 | 5' arm 3' arm | ||
| 6789 | + | 58795 | 87 | 20 | -27.8 | NP_046227 | 5' arm 3' arm | ||
| 6920 | - | 35232 | 87 | 20 | -24.6 | NP_046199 | 5' arm 3' arm | ||
| 6991 | - | 98683 | 68 | 20 | -23.3 | NP_046275 | 5' arm 3' arm | ||
| 6775 | + | 42964 | 86 | 20 | -21.1 | NP_046209 | 5' arm 3' arm | ||
| 6738 | + | 14534 | 81 | 20 | -20.8 | NP_046175 | 5' arm 3' arm | ||
| 6934 | - | 45331 | 89 | 20 | -30.7 | NP_046210 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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