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| GenBank Identifier | RefSeq Acc. | Name |
| 11038431 | NC_001875.2 | Orgyia pseudotsugata multicapsid nucleopolyhedrovirus |
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| ID | strand | start position | length |
sRNA loop score
|
core MFE. | NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
| 6936 | - | 45733 | 88 | 23.5 | -27.6 | NP_046210 | 5' arm 3' arm | ||
| 7026 | - | 130539 | 88 | 23.5 | -22.3 | 5' arm 3' arm | |||
| 6752 | + | 26967 | 90 | 23.5 | -23.9 | NP_046188 | 5' arm 3' arm | ||
| 7006 | - | 110616 | 85 | 23.5 | -19.82 | NP_046287 | 5' arm 3' arm | ||
| 6950 | - | 58155 | 87 | 23 | -28.6 | NP_046227 | 5' arm 3' arm | ||
| 6797 | + | 64801 | 89 | 23 | -28.6 | NP_046236 | 5' arm 3' arm | ||
| 6836 | + | 92694 | 89 | 23 | -28 | NP_046268 | 5' arm 3' arm | ||
| 6976 | - | 85023 | 90 | 23 | -21.8 | NP_046258 | 5' arm 3' arm | ||
| 6850 | + | 102180 | 90 | 23 | -24.5 | NP_046280 | 5' arm 3' arm | ||
| 6847 | + | 100218 | 88 | 23 | -30.4 | NP_046278 | 5' arm 3' arm | ||
| 7014 | - | 118252 | 89 | 23 | -23.3 | NP_046294 | 5' arm 3' arm | ||
| 6748 | + | 25964 | 90 | 23 | -22.9 | NP_046188 | 5' arm 3' arm | ||
| 6863 | + | 117729 | 88 | 23 | -19.7 | 5' arm 3' arm | |||
| 6834 | + | 91745 | 89 | 23 | -27.9 | NP_046265 | 5' arm 3' arm | ||
| 6967 | - | 74374 | 88 | 23 | -30.5 | NP_046247 | 5' arm 3' arm | ||
| 6987 | - | 96981 | 90 | 23 | -28.8 | NP_046274 | 5' arm 3' arm | ||
| 6774 | + | 42701 | 90 | 23 | -36.8 | NP_046209 | 5' arm 3' arm | ||
| 6778 | + | 45131 | 89 | 23 | -23.7 | NP_046210 | 5' arm 3' arm | ||
| 6978 | - | 85566 | 88 | 23 | -23.1 | NP_046258 | 5' arm 3' arm | ||
| 7029 | - | 131790 | 87 | 23 | -20.2 | NP_046308 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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