miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
45686008 NC_005832.1 Ambystoma tigrinum virus

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
27240 - 105021 90 22.5 -22.2 YP_003866 5' arm      3' arm
27136 + 104137 90 20.5 -19.8 YP_003865 5' arm      3' arm
27135 + 103632 81 21 -27.3 YP_003864 5' arm      3' arm
27238 - 101861 90 21 -33.6 YP_003862 5' arm      3' arm
27239 - 102452 90 21 -22.8 YP_003862 5' arm      3' arm
27133 + 101776 81 21 -28.3 YP_003862 5' arm      3' arm
27134 + 101937 90 23 -24.8 YP_003862 5' arm      3' arm
27132 + 100537 84 19.5 -24 YP_003859 5' arm      3' arm
27237 - 98729 87 20 -20.4 YP_003857 5' arm      3' arm
27235 - 98155 88 21.5 -22.2 YP_003857 5' arm      3' arm
27236 - 98353 85 19.5 -19.6 YP_003857 5' arm      3' arm
27233 - 97367 89 20 -21 YP_003856 5' arm      3' arm
27234 - 97850 90 24 -25 YP_003856 5' arm      3' arm
27130 + 97106 81 19 -24.2 YP_003856 5' arm      3' arm
27127 + 94907 88 20.5 -21.8 YP_003855 5' arm      3' arm
27129 + 95675 89 24.5 -23.1 YP_003855 5' arm      3' arm
27128 + 95442 86 21 -20.6 YP_003855 5' arm      3' arm
27232 - 95753 86 20.5 -25.6 YP_003855 5' arm      3' arm
27231 - 94357 83 19.5 -19.9 YP_003855 5' arm      3' arm
27126 + 93900 80 19 -30.2 YP_003854 5' arm      3' arm
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.