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GenBank Identifier | RefSeq Acc. | Name |
45686008 | NC_005832.1 | Ambystoma tigrinum virus |
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ID | strand | start position | length | sRNA loop score | core MFE. | NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
27240 | - | 105021 | 90 | 22.5 | -22.2 | YP_003866 | 5' arm 3' arm | ||
27136 | + | 104137 | 90 | 20.5 | -19.8 | YP_003865 | 5' arm 3' arm | ||
27135 | + | 103632 | 81 | 21 | -27.3 | YP_003864 | 5' arm 3' arm | ||
27238 | - | 101861 | 90 | 21 | -33.6 | YP_003862 | 5' arm 3' arm | ||
27239 | - | 102452 | 90 | 21 | -22.8 | YP_003862 | 5' arm 3' arm | ||
27133 | + | 101776 | 81 | 21 | -28.3 | YP_003862 | 5' arm 3' arm | ||
27134 | + | 101937 | 90 | 23 | -24.8 | YP_003862 | 5' arm 3' arm | ||
27132 | + | 100537 | 84 | 19.5 | -24 | YP_003859 | 5' arm 3' arm | ||
27237 | - | 98729 | 87 | 20 | -20.4 | YP_003857 | 5' arm 3' arm | ||
27235 | - | 98155 | 88 | 21.5 | -22.2 | YP_003857 | 5' arm 3' arm | ||
27236 | - | 98353 | 85 | 19.5 | -19.6 | YP_003857 | 5' arm 3' arm | ||
27233 | - | 97367 | 89 | 20 | -21 | YP_003856 | 5' arm 3' arm | ||
27234 | - | 97850 | 90 | 24 | -25 | YP_003856 | 5' arm 3' arm | ||
27130 | + | 97106 | 81 | 19 | -24.2 | YP_003856 | 5' arm 3' arm | ||
27127 | + | 94907 | 88 | 20.5 | -21.8 | YP_003855 | 5' arm 3' arm | ||
27129 | + | 95675 | 89 | 24.5 | -23.1 | YP_003855 | 5' arm 3' arm | ||
27128 | + | 95442 | 86 | 21 | -20.6 | YP_003855 | 5' arm 3' arm | ||
27232 | - | 95753 | 86 | 20.5 | -25.6 | YP_003855 | 5' arm 3' arm | ||
27231 | - | 94357 | 83 | 19.5 | -19.9 | YP_003855 | 5' arm 3' arm | ||
27126 | + | 93900 | 80 | 19 | -30.2 | YP_003854 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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