miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
45686008 NC_005832.1 Ambystoma tigrinum virus

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
27200 - 65080 88 19 -19.4 YP_003831 5' arm      3' arm
27199 - 62358 89 22 -19.5 5' arm      3' arm
27198 - 56549 89 20 -21.6 YP_003824 5' arm      3' arm
27197 - 54260 85 20.5 -20.8 YP_003823 5' arm      3' arm
27196 - 53966 84 21.5 -32.8 YP_003823 5' arm      3' arm
27195 - 52440 90 22.5 -24.3 YP_003820 5' arm      3' arm
27194 - 52068 88 21 -21.2 YP_003820 5' arm      3' arm
27193 - 50499 88 20 -24.5 YP_003819 5' arm      3' arm
27192 - 48959 89 20 -27.9 YP_003818 5' arm      3' arm
27191 - 48797 86 19.5 -21.7 YP_003818 5' arm      3' arm
27190 - 48295 89 20 -25.7 YP_003817 5' arm      3' arm
27189 - 47855 89 19 -25 YP_003817 5' arm      3' arm
27188 - 46027 86 21.5 -20.1 YP_003817 5' arm      3' arm
27187 - 45733 90 20 -23.1 YP_003817 5' arm      3' arm
27186 - 43799 90 23 -21.3 YP_003815 5' arm      3' arm
27185 - 43537 90 19.5 -27.2 YP_003815 5' arm      3' arm
27184 - 42630 89 19 -23 YP_003815 5' arm      3' arm
27183 - 42474 85 21 -27.8 YP_003815 5' arm      3' arm
27182 - 40864 90 20 -28.2 YP_003814 5' arm      3' arm
27181 - 40729 87 21.5 -20.3 YP_003814 5' arm      3' arm
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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.