miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
45686008 NC_005832.1 Ambystoma tigrinum virus

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
27220 - 83424 88 19 -31.1 YP_003845 5' arm      3' arm
27219 - 82564 87 19 -22 YP_003844 5' arm      3' arm
27218 - 82442 89 20 -21.9 YP_003844 5' arm      3' arm
27217 - 80829 85 21 -31.4 YP_003843 5' arm      3' arm
27216 - 80322 90 19.5 -20.4 YP_003843 5' arm      3' arm
27215 - 79774 89 19.5 -20.5 YP_003843 5' arm      3' arm
27214 - 79678 86 21.5 -23 YP_003843 5' arm      3' arm
27213 - 79549 88 22.5 -19.4 YP_003843 5' arm      3' arm
27212 - 79141 89 23.5 -21.1 YP_003843 5' arm      3' arm
27211 - 78637 88 19 -23.7 YP_003843 5' arm      3' arm
27210 - 78258 90 19 -24 YP_003843 5' arm      3' arm
27209 - 76141 90 20 -27.8 YP_003839 5' arm      3' arm
27208 - 75662 89 23 -20 YP_003839 5' arm      3' arm
27207 - 72525 85 20.5 -27.1 YP_003837 5' arm      3' arm
27206 - 67833 90 19.5 -19.4 YP_003831 5' arm      3' arm
27205 - 67432 87 23.5 -26.52 YP_003831 5' arm      3' arm
27204 - 65879 87 22.5 -24 YP_003831 5' arm      3' arm
27203 - 65673 88 19 -24 YP_003831 5' arm      3' arm
27202 - 65542 84 19.5 -22.4 YP_003831 5' arm      3' arm
27201 - 65277 88 21 -23.8 YP_003831 5' arm      3' arm
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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.