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GenBank Identifier | RefSeq Acc. | Name |
48697190 | NC_005887.1 | Burkholderia cepacia complex phage BcepC6B |
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ID | strand | start position | length | sRNA loop score | core MFE. | NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
28181 | - | 41108 | 79 | 19.5 | -19.6 | YP_024966 | 5' arm 3' arm | ||
28180 | - | 40823 | 88 | 19 | -23.5 | YP_024966 | 5' arm 3' arm | ||
28179 | - | 40704 | 89 | 21 | -19.5 | YP_024966 | 5' arm 3' arm | ||
28178 | - | 40544 | 90 | 22.5 | -26.2 | YP_024966 | 5' arm 3' arm | ||
28177 | - | 38895 | 89 | 22.5 | -19.6 | YP_024964 | 5' arm 3' arm | ||
28176 | - | 38096 | 85 | 19.5 | -21.7 | 5' arm 3' arm | |||
28175 | - | 36578 | 89 | 21 | -20.5 | YP_024960 | 5' arm 3' arm | ||
28174 | - | 34690 | 89 | 19 | -19.9 | YP_024958 | 5' arm 3' arm | ||
28173 | - | 34489 | 89 | 19.5 | -28 | 5' arm 3' arm | |||
28172 | - | 33271 | 90 | 20 | -24.1 | 5' arm 3' arm | |||
28171 | - | 32798 | 90 | 20.5 | -26.7 | YP_024954 | 5' arm 3' arm | ||
28170 | - | 31718 | 88 | 20.5 | -23.3 | YP_024953 | 5' arm 3' arm | ||
28169 | - | 31427 | 88 | 20.5 | -20.8 | YP_024952 | 5' arm 3' arm | ||
28168 | - | 31338 | 90 | 20 | -24.9 | YP_024952 | 5' arm 3' arm | ||
28167 | - | 30599 | 88 | 19.5 | -20.1 | YP_024952 | 5' arm 3' arm | ||
28166 | - | 30153 | 88 | 23 | -24.4 | YP_024952 | 5' arm 3' arm | ||
28165 | - | 29345 | 87 | 23.5 | -23.2 | 5' arm 3' arm | |||
28164 | - | 29010 | 85 | 19 | -21.1 | YP_024951 | 5' arm 3' arm | ||
28163 | - | 28464 | 90 | 21.5 | -24.9 | YP_024950 | 5' arm 3' arm | ||
28162 | - | 28251 | 88 | 20.5 | -22.7 | YP_024950 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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