miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
48697190 NC_005887.1 Burkholderia cepacia complex phage BcepC6B

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
28146 - 19069 90 22.5 -27.4 5' arm      3' arm
28091 + 38098 89 19 -20.5 5' arm      3' arm
28044 + 23841 81 22 -23.8 5' arm      3' arm
28076 + 33185 89 21 -22 5' arm      3' arm
28089 + 37614 89 20 -20.9 5' arm      3' arm
28048 + 26056 88 20.5 -19.5 5' arm      3' arm
28090 + 37877 90 24.5 -25 5' arm      3' arm
28033 + 18980 90 20.5 -28.4 5' arm      3' arm
28061 + 29259 87 24.5 -27 5' arm      3' arm
28105 - 2797 90 24 -24.1 5' arm      3' arm
28133 - 13813 90 21.5 -26.2 5' arm      3' arm
28165 - 29345 87 23.5 -23.2 5' arm      3' arm
28176 - 38096 85 19.5 -21.7 5' arm      3' arm
28173 - 34489 89 19.5 -28 5' arm      3' arm
28158 - 26036 89 19 -24.1 5' arm      3' arm
28172 - 33271 90 20 -24.1 5' arm      3' arm
28079 + 34282 88 23.5 -24.1 5' arm      3' arm
27996 + 225 88 21 -20.2 YP_024921 5' arm      3' arm
27999 + 1824 88 20 -24.8 YP_024923 5' arm      3' arm
28001 + 2070 88 21.5 -22.9 YP_024923 5' arm      3' arm
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.