miRNA display CGI

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ID	strand	start position	length	sRNA loop score	core MFE.	NP ORF	Known viral miRNA	Match to own genomic region#	Target prediction with RNAhybrid
28123	-	9150	88	20.5	-20.5	YP_024932		5' arm      3' arm
28091	+	38098	89	19	-20.5			5' arm      3' arm
28060	+	28999	86	22	-20.5	YP_024951		5' arm      3' arm
28065	+	30189	90	19	-20.5	YP_024952		5' arm      3' arm
28175	-	36578	89	21	-20.5	YP_024960		5' arm      3' arm
28010	+	7954	90	19	-20.5	YP_024931		5' arm      3' arm
28157	-	25002	86	19	-20.6	YP_024945		5' arm      3' arm
28154	-	24361	90	21.5	-20.6	YP_024945		5' arm      3' arm
28009	+	7299	88	21	-20.6	YP_024929		5' arm      3' arm
28139	-	16375	87	21.5	-20.8	YP_024936		5' arm      3' arm
28007	+	4637	87	20	-20.8	YP_024925		5' arm      3' arm
28149	-	21412	87	21	-20.8	YP_024939		5' arm      3' arm
28169	-	31427	88	20.5	-20.8	YP_024952		5' arm      3' arm
28130	-	13021	90	23	-20.9	YP_024935		5' arm      3' arm
28089	+	37614	89	20	-20.9			5' arm      3' arm
28093	+	39024	89	23	-20.9	YP_024964		5' arm      3' arm
28051	+	26883	90	20	-20.9	YP_024948		5' arm      3' arm
28068	+	30830	90	19.5	-21	YP_024952		5' arm      3' arm
28136	-	15410	89	22.5	-21	YP_024936		5' arm      3' arm
28148	-	21287	89	21.5	-21	YP_024939		5' arm      3' arm

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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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