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| GenBank Identifier | RefSeq Acc. | Name |
| 48697190 | NC_005887.1 | Burkholderia cepacia complex phage BcepC6B |
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| ID | strand | start position | length | sRNA loop score | core MFE. |
NP ORF
|
Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
| 28053 | + | 27562 | 89 | 20.5 | -29 | YP_024949 | 5' arm 3' arm | ||
| 28050 | + | 26346 | 89 | 24.5 | -27.7 | YP_024948 | 5' arm 3' arm | ||
| 28160 | - | 27389 | 90 | 23 | -26.6 | YP_024948 | 5' arm 3' arm | ||
| 28159 | - | 26977 | 85 | 22 | -21.9 | YP_024948 | 5' arm 3' arm | ||
| 28051 | + | 26883 | 90 | 20 | -20.9 | YP_024948 | 5' arm 3' arm | ||
| 28161 | - | 27512 | 84 | 19.5 | -25.1 | YP_024948 | 5' arm 3' arm | ||
| 28052 | + | 26993 | 86 | 19 | -24.8 | YP_024948 | 5' arm 3' arm | ||
| 28049 | + | 26155 | 90 | 21.5 | -25.1 | YP_024948 | 5' arm 3' arm | ||
| 28157 | - | 25002 | 86 | 19 | -20.6 | YP_024945 | 5' arm 3' arm | ||
| 28156 | - | 24774 | 90 | 19.5 | -24.7 | YP_024945 | 5' arm 3' arm | ||
| 28155 | - | 24653 | 90 | 21 | -22.7 | YP_024945 | 5' arm 3' arm | ||
| 28046 | + | 24625 | 90 | 21.5 | -21.8 | YP_024945 | 5' arm 3' arm | ||
| 28154 | - | 24361 | 90 | 21.5 | -20.6 | YP_024945 | 5' arm 3' arm | ||
| 28045 | + | 24225 | 90 | 21 | -26.9 | YP_024945 | 5' arm 3' arm | ||
| 28047 | + | 24853 | 89 | 19 | -26.9 | YP_024945 | 5' arm 3' arm | ||
| 28153 | - | 24013 | 90 | 21 | -32.2 | YP_024945 | 5' arm 3' arm | ||
| 28152 | - | 23661 | 85 | 20.5 | -28.4 | YP_024944 | 5' arm 3' arm | ||
| 28151 | - | 23405 | 85 | 20.5 | -25.4 | YP_024943 | 5' arm 3' arm | ||
| 28043 | + | 22714 | 89 | 21 | -21.4 | YP_024942 | 5' arm 3' arm | ||
| 28042 | + | 22566 | 87 | 21 | -25.1 | YP_024941 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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