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| GenBank Identifier | RefSeq Acc. | Name |
| 72257064 | NC_005886.2 | Burkholderia cenocepacia phage BcepB1A |
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| ID | strand | start position | length | sRNA loop score |
core MFE.
|
NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
| 27946 | + | 38600 | 90 | 21.5 | -23.32 | YP_024897 | 5' arm 3' arm | ||
| 27938 | + | 25682 | 90 | 20 | -23.3 | YP_024895 | 5' arm 3' arm | ||
| 27934 | + | 21220 | 90 | 20.5 | -23.2 | YP_024875 | 5' arm 3' arm | ||
| 27935 | + | 22035 | 89 | 21 | -23.2 | YP_024875 | 5' arm 3' arm | ||
| 27936 | + | 22526 | 81 | 22.5 | -23.02 | YP_291177 | 5' arm 3' arm | ||
| 27945 | + | 35483 | 89 | 19 | -23 | YP_024893 | 5' arm 3' arm | ||
| 27951 | + | 43519 | 86 | 24 | -22.9 | YP_024902 | 5' arm 3' arm | ||
| 27955 | + | 44960 | 87 | 20 | -22.9 | YP_024903 | 5' arm 3' arm | ||
| 27939 | + | 27209 | 87 | 20 | -22.8 | YP_024883 | 5' arm 3' arm | ||
| 27963 | - | 11827 | 89 | 20 | -22.8 | YP_024864 | 5' arm 3' arm | ||
| 27979 | - | 25833 | 86 | 20 | -22.6 | YP_024895 | 5' arm 3' arm | ||
| 27960 | - | 7118 | 89 | 22 | -22 | YP_024916 | 5' arm 3' arm | ||
| 27928 | + | 16218 | 90 | 23.5 | -21.7 | YP_024871 | 5' arm 3' arm | ||
| 27947 | + | 41268 | 82 | 20.5 | -21.7 | YP_024900 | 5' arm 3' arm | ||
| 27954 | + | 44069 | 87 | 22.5 | -21.6 | YP_024902 | 5' arm 3' arm | ||
| 27977 | - | 24469 | 87 | 21 | -21.4 | YP_024878 | 5' arm 3' arm | ||
| 27926 | + | 14893 | 85 | 22 | -21.3 | YP_024868 | 5' arm 3' arm | ||
| 27986 | - | 35571 | 89 | 22.5 | -21.3 | YP_024893 | 5' arm 3' arm | ||
| 27988 | - | 36521 | 89 | 20 | -21.1 | YP_024894 | 5' arm 3' arm | ||
| 27968 | - | 14977 | 90 | 21 | -21.1 | YP_024868 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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