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GenBank Identifier | RefSeq Acc. | Name |
56692908 | NC_006552.1 | Pseudomonas aeruginosa phage F116 |
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ID | strand | start position | length | sRNA loop score | core MFE. | NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
30752 | + | 29503 | 86 | 23.5 | -35.5 | YP_164306 | 5' arm 3' arm | ||
30923 | - | 54403 | 88 | 24.5 | -34.5 | YP_164324 | 5' arm 3' arm | ||
30781 | + | 42418 | 90 | 20.5 | -33.7 | YP_164318 | 5' arm 3' arm | ||
30723 | + | 12878 | 89 | 25.5 | -33.4 | YP_164282 | 5' arm 3' arm | ||
30716 | + | 10335 | 86 | 25 | -33.3 | YP_164278 | 5' arm 3' arm | ||
30918 | - | 53229 | 87 | 23.5 | -33 | YP_164323 | 5' arm 3' arm | ||
30706 | + | 6898 | 88 | 19 | -32.3 | YP_164274 | 5' arm 3' arm | ||
30883 | - | 39110 | 87 | 20 | -31.6 | YP_164316 | 5' arm 3' arm | ||
30835 | - | 19554 | 90 | 22.5 | -31.2 | YP_164295 | 5' arm 3' arm | ||
30742 | + | 20516 | 87 | 20.5 | -30.4 | YP_164297 | 5' arm 3' arm | ||
30793 | + | 50580 | 84 | 24 | -30.3 | YP_164323 | 5' arm 3' arm | ||
30847 | - | 24572 | 90 | 23 | -30.2 | YP_164303 | 5' arm 3' arm | ||
30791 | + | 48672 | 87 | 20 | -30.2 | YP_164323 | 5' arm 3' arm | ||
30818 | - | 3664 | 88 | 20.5 | -30 | YP_164270 | 5' arm 3' arm | ||
30695 | + | 3492 | 89 | 22.5 | -29.9 | YP_164270 | 5' arm 3' arm | ||
30684 | + | 947 | 90 | 22.5 | -29.9 | YP_164266 | 5' arm 3' arm | ||
30698 | + | 4682 | 90 | 23.5 | -29.5 | YP_164272 | 5' arm 3' arm | ||
30882 | - | 38687 | 87 | 22 | -29.3 | YP_164316 | 5' arm 3' arm | ||
30930 | - | 59312 | 90 | 19.5 | -29.1 | 5' arm 3' arm | |||
30933 | - | 60174 | 85 | 22.5 | -29 | YP_164327 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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