miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
20198505 NC_002512.2 Murid herpesvirus 2

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
9256 - 58860 90 20.5 -20.4 5' arm      3' arm
8964 + 21416 87 20.5 -20.4 NP_064135 5' arm      3' arm
9313 - 109576 88 23 -20.4 NP_064183 5' arm      3' arm
9214 - 23929 85 20 -20.4 NP_064136 5' arm      3' arm
9093 + 107515 90 21.5 -20.4 NP_064182 5' arm      3' arm
9172 + 188650 90 23.5 -20.4 NP_064246 5' arm      3' arm
9284 - 76570 90 21.5 -20.42 5' arm      3' arm
9360 - 155112 85 20 -20.5 NP_064215 5' arm      3' arm
9091 + 106483 90 20.5 -20.5 NP_064182 5' arm      3' arm
9383 - 198479 90 21 -20.5 NP_064252 5' arm      3' arm
9043 + 81580 86 21 -20.5 NP_064165 5' arm      3' arm
9273 - 69594 89 22 -20.5 NP_064162 5' arm      3' arm
9000 + 46037 88 20.5 -20.6 NP_064152 5' arm      3' arm
9065 + 90253 90 23.5 -20.6 NP_064171 5' arm      3' arm
8960 + 19116 90 20 -20.6 NP_064132 5' arm      3' arm
9027 + 72358 90 20.5 -20.6 NP_064163 5' arm      3' arm
9374 - 191352 89 19 -20.7 NP_064247 5' arm      3' arm
9342 - 133015 89 21.5 -20.7 NP_064201 5' arm      3' arm
9087 + 105025 89 21.5 -20.7 NP_064181 5' arm      3' arm
9020 + 63776 89 24 -20.7 NP_064160 5' arm      3' arm
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.