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GenBank Identifier | RefSeq Acc. | Name |
20198505 | NC_002512.2 | Murid herpesvirus 2 |
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ID | strand | start position | length | sRNA loop score | core MFE. | NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
9297 | - | 95638 | 87 | 21 | -29.6 | NP_064175 | 5' arm 3' arm | ||
9144 | + | 142367 | 89 | 21.5 | -29.4 | NP_064206 | 5' arm 3' arm | ||
9046 | + | 82750 | 90 | 22.5 | -29.3 | 5' arm 3' arm | |||
9346 | - | 135695 | 89 | 21.5 | -29.3 | NP_064202 | 5' arm 3' arm | ||
9030 | + | 75361 | 90 | 29.5 | -29.2 | 5' arm 3' arm | |||
9252 | - | 55710 | 87 | 23.5 | -29.2 | NP_064154 | 5' arm 3' arm | ||
9194 | - | 10059 | 87 | 21.5 | -29.1 | NP_064125 | 5' arm 3' arm | ||
8980 | + | 33020 | 89 | 19 | -28.9 | NP_064141 | 5' arm 3' arm | ||
9333 | - | 127334 | 88 | 21.5 | -28.9 | NP_064195 | 5' arm 3' arm | ||
9189 | - | 6168 | 80 | 20 | -28.8 | NP_064120 | 5' arm 3' arm | ||
9224 | - | 34582 | 87 | 23.5 | -28.8 | NP_064142 | 5' arm 3' arm | ||
9002 | + | 46615 | 89 | 25.5 | -28.8 | NP_064152 | 5' arm 3' arm | ||
9038 | + | 79681 | 87 | 20 | -28.7 | NP_064165 | 5' arm 3' arm | ||
9129 | + | 130395 | 90 | 22.5 | -28.6 | NP_064199 | 5' arm 3' arm | ||
9171 | + | 188550 | 89 | 22.5 | -28.6 | NP_064246 | 5' arm 3' arm | ||
9034 | + | 78676 | 87 | 21.5 | -28.5 | 5' arm 3' arm | |||
8989 | + | 40740 | 85 | 24.5 | -28.4 | NP_064149 | 5' arm 3' arm | ||
9025 | + | 69983 | 88 | 19.5 | -28.4 | NP_064162 | 5' arm 3' arm | ||
9222 | - | 33159 | 89 | 20 | -28.4 | NP_064141 | 5' arm 3' arm | ||
9244 | - | 52428 | 89 | 19 | -28.4 | NP_064154 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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