miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
20198505 NC_002512.2 Murid herpesvirus 2

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
9210 - 22809 90 24 -28.3 NP_064136 5' arm      3' arm
9215 - 24267 86 21 -28.3 NP_064137 5' arm      3' arm
8971 + 28713 83 20 -28.2 NP_064139 5' arm      3' arm
9173 + 191475 90 21 -28.2 NP_064247 5' arm      3' arm
9188 - 5473 90 20 -28.2 NP_064118 5' arm      3' arm
9151 + 152162 87 27 -28.1 NP_064211 5' arm      3' arm
9272 - 69377 90 19.5 -28.1 NP_064162 5' arm      3' arm
8991 + 41566 89 24.5 -28.1 NP_064150 5' arm      3' arm
9266 - 63363 90 19 -28.1 NP_064160 5' arm      3' arm
9012 + 58169 90 19.5 -28 NP_064156 5' arm      3' arm
9197 - 12862 88 20.5 -28 NP_064127 5' arm      3' arm
9199 - 15160 89 19 -28 5' arm      3' arm
9077 + 96312 90 21 -28 NP_064175 5' arm      3' arm
9223 - 33519 88 20.5 -28 NP_064141 5' arm      3' arm
8965 + 21530 90 21.5 -27.9 NP_064135 5' arm      3' arm
8997 + 43869 90 20 -27.9 NP_064151 5' arm      3' arm
9079 + 98178 87 23 -27.9 NP_064177 5' arm      3' arm
9187 - 4792 90 22.5 -27.7 NP_064116 5' arm      3' arm
8958 + 18669 90 19 -27.7 NP_064132 5' arm      3' arm
9110 + 115233 90 22 -27.7 NP_064185 5' arm      3' arm
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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.