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GenBank Identifier | RefSeq Acc. | Name |
20198505 | NC_002512.2 | Murid herpesvirus 2 |
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ID | strand | start position | length | sRNA loop score | core MFE. | NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
9187 | - | 4792 | 90 | 22.5 | -27.7 | NP_064116 | 5' arm 3' arm | ||
8945 | + | 3966 | 88 | 20.5 | -34.8 | NP_064117 | 5' arm 3' arm | ||
9186 | - | 4157 | 86 | 22 | -32.2 | NP_064117 | 5' arm 3' arm | ||
9185 | - | 3585 | 87 | 25 | -34.2 | NP_064117 | 5' arm 3' arm | ||
9188 | - | 5473 | 90 | 20 | -28.2 | NP_064118 | 5' arm 3' arm | ||
9190 | - | 6338 | 90 | 21.5 | -22.1 | NP_064119 | 5' arm 3' arm | ||
8946 | + | 6090 | 90 | 20.5 | -23.3 | NP_064119 | 5' arm 3' arm | ||
9189 | - | 6168 | 80 | 20 | -28.8 | NP_064120 | 5' arm 3' arm | ||
9191 | - | 6828 | 84 | 19 | -26.6 | NP_064121 | 5' arm 3' arm | ||
9192 | - | 8038 | 84 | 19 | -23.1 | NP_064122 | 5' arm 3' arm | ||
9193 | - | 8747 | 90 | 25.5 | -30.4 | NP_064123 | 5' arm 3' arm | ||
8947 | + | 8658 | 90 | 25 | -27 | NP_064123 | 5' arm 3' arm | ||
8948 | + | 8844 | 89 | 19 | -26 | NP_064124 | 5' arm 3' arm | ||
9194 | - | 10059 | 87 | 21.5 | -29.1 | NP_064125 | 5' arm 3' arm | ||
8949 | + | 10727 | 87 | 19 | -26.6 | NP_064126 | 5' arm 3' arm | ||
9195 | - | 10841 | 90 | 19.5 | -23.7 | NP_064126 | 5' arm 3' arm | ||
8952 | + | 13323 | 85 | 19.5 | -23.1 | NP_064127 | 5' arm 3' arm | ||
9196 | - | 11682 | 90 | 20 | -20.13 | NP_064127 | 5' arm 3' arm | ||
8951 | + | 13223 | 88 | 20.5 | -22.2 | NP_064127 | 5' arm 3' arm | ||
9197 | - | 12862 | 88 | 20.5 | -28 | NP_064127 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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