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GenBank Identifier | RefSeq Acc. | Name |
20198505 | NC_002512.2 | Murid herpesvirus 2 |
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ID | strand | start position | length | sRNA loop score | core MFE. | NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
8961 | + | 19210 | 86 | 20 | -26.3 | NP_064132 | 5' arm 3' arm | ||
8980 | + | 33020 | 89 | 19 | -28.9 | NP_064141 | 5' arm 3' arm | ||
8982 | + | 35392 | 90 | 19.5 | -20.2 | NP_064143 | 5' arm 3' arm | ||
8979 | + | 32585 | 90 | 19.5 | -27.42 | NP_064141 | 5' arm 3' arm | ||
8977 | + | 32366 | 87 | 20 | -22.3 | NP_064141 | 5' arm 3' arm | ||
8981 | + | 35295 | 86 | 23 | -20 | NP_064143 | 5' arm 3' arm | ||
8978 | + | 32485 | 88 | 24 | -33.2 | NP_064141 | 5' arm 3' arm | ||
8976 | + | 32254 | 88 | 24.5 | -26 | NP_064141 | 5' arm 3' arm | ||
8973 | + | 30530 | 90 | 19 | -24.6 | NP_064140 | 5' arm 3' arm | ||
8972 | + | 28866 | 89 | 19.5 | -19.7 | NP_064139 | 5' arm 3' arm | ||
8971 | + | 28713 | 83 | 20 | -28.2 | NP_064139 | 5' arm 3' arm | ||
8974 | + | 31196 | 89 | 23 | -24 | NP_064140 | 5' arm 3' arm | ||
8969 | + | 25891 | 88 | 19.5 | -20.9 | NP_064137 | 5' arm 3' arm | ||
8966 | + | 22963 | 87 | 20 | -26.8 | NP_064136 | 5' arm 3' arm | ||
8967 | + | 24313 | 87 | 21.5 | -26.1 | NP_064137 | 5' arm 3' arm | ||
8970 | + | 27000 | 88 | 22 | -26.9 | NP_064138 | 5' arm 3' arm | ||
8968 | + | 25594 | 88 | 22 | -21.5 | NP_064137 | 5' arm 3' arm | ||
8958 | + | 18669 | 90 | 19 | -27.7 | NP_064132 | 5' arm 3' arm | ||
8962 | + | 20107 | 89 | 20 | -20.8 | NP_064134 | 5' arm 3' arm | ||
8960 | + | 19116 | 90 | 20 | -20.6 | NP_064132 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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