miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
20198505 NC_002512.2 Murid herpesvirus 2

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
8961 + 19210 86 20 -26.3 NP_064132 5' arm      3' arm
8980 + 33020 89 19 -28.9 NP_064141 5' arm      3' arm
8982 + 35392 90 19.5 -20.2 NP_064143 5' arm      3' arm
8979 + 32585 90 19.5 -27.42 NP_064141 5' arm      3' arm
8977 + 32366 87 20 -22.3 NP_064141 5' arm      3' arm
8981 + 35295 86 23 -20 NP_064143 5' arm      3' arm
8978 + 32485 88 24 -33.2 NP_064141 5' arm      3' arm
8976 + 32254 88 24.5 -26 NP_064141 5' arm      3' arm
8973 + 30530 90 19 -24.6 NP_064140 5' arm      3' arm
8972 + 28866 89 19.5 -19.7 NP_064139 5' arm      3' arm
8971 + 28713 83 20 -28.2 NP_064139 5' arm      3' arm
8974 + 31196 89 23 -24 NP_064140 5' arm      3' arm
8969 + 25891 88 19.5 -20.9 NP_064137 5' arm      3' arm
8966 + 22963 87 20 -26.8 NP_064136 5' arm      3' arm
8967 + 24313 87 21.5 -26.1 NP_064137 5' arm      3' arm
8970 + 27000 88 22 -26.9 NP_064138 5' arm      3' arm
8968 + 25594 88 22 -21.5 NP_064137 5' arm      3' arm
8958 + 18669 90 19 -27.7 NP_064132 5' arm      3' arm
8962 + 20107 89 20 -20.8 NP_064134 5' arm      3' arm
8960 + 19116 90 20 -20.6 NP_064132 5' arm      3' arm
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.