miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
20198505 NC_002512.2 Murid herpesvirus 2

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
8949 + 10727 87 19 -26.6 NP_064126 5' arm      3' arm
9045 + 82570 89 19 -26.9 5' arm      3' arm
9158 + 154047 87 19 -22.2 NP_064213 5' arm      3' arm
9382 - 197185 90 19 -23.5 NP_064251 5' arm      3' arm
9069 + 92808 87 19 -26.2 NP_064174 5' arm      3' arm
9278 - 73849 87 19 -23.7 NP_064163 5' arm      3' arm
9019 + 62642 85 19 -26.8 NP_064160 5' arm      3' arm
9016 + 59330 88 19 -24.3 NP_064158 5' arm      3' arm
9337 - 129061 90 19 -20.3 NP_064196 5' arm      3' arm
9096 + 108983 85 19 -25.1 NP_064183 5' arm      3' arm
9117 + 121114 89 19 -31.5 NP_064189 5' arm      3' arm
9121 + 123145 89 19 -19.4 NP_064192 5' arm      3' arm
9119 + 122310 90 19 -20.3 NP_064191 5' arm      3' arm
8958 + 18669 90 19 -27.7 NP_064132 5' arm      3' arm
9009 + 55862 90 19 -24 NP_064154 5' arm      3' arm
9344 - 133638 87 19 -22.5 NP_064202 5' arm      3' arm
9374 - 191352 89 19 -20.7 NP_064247 5' arm      3' arm
9143 + 142018 87 19 -30.14 5' arm      3' arm
9244 - 52428 89 19 -28.4 NP_064154 5' arm      3' arm
9386 - 224274 90 19 -20 NP_064274 5' arm      3' arm
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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.