miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
20198505 NC_002512.2 Murid herpesvirus 2

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
9252 - 55710 87 23.5 -29.2 NP_064154 5' arm      3' arm
9146 + 147771 86 23.5 -26.6 NP_064207 5' arm      3' arm
9311 - 108270 90 23.5 -21.3 NP_064182 5' arm      3' arm
9368 - 183428 89 23.5 -21.3 NP_064241 5' arm      3' arm
9358 - 152799 90 23.5 -26 5' arm      3' arm
9307 - 101413 88 23.5 -26.5 NP_064179 5' arm      3' arm
9379 - 195721 87 23.5 -21.1 NP_064250 5' arm      3' arm
9172 + 188650 90 23.5 -20.4 NP_064246 5' arm      3' arm
9207 - 20332 90 23.5 -25.6 NP_064134 5' arm      3' arm
9065 + 90253 90 23.5 -20.6 NP_064171 5' arm      3' arm
9224 - 34582 87 23.5 -28.8 NP_064142 5' arm      3' arm
9218 - 28798 88 23.5 -23 NP_064139 5' arm      3' arm
9381 - 197068 89 23.5 -21.5 5' arm      3' arm
9325 - 115854 90 23.5 -23 NP_064186 5' arm      3' arm
9155 + 153349 90 23 -24.2 5' arm      3' arm
9103 + 112401 89 23 -24 NP_064185 5' arm      3' arm
9037 + 79150 90 23 -31.4 5' arm      3' arm
9371 - 187205 88 23 -25.9 NP_064245 5' arm      3' arm
9380 - 196703 88 23 -30.6 NP_064250 5' arm      3' arm
8974 + 31196 89 23 -24 NP_064140 5' arm      3' arm
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.