miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
20198505 NC_002512.2 Murid herpesvirus 2

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
9037 + 79150 90 23 -31.4 5' arm      3' arm
9092 + 106724 90 23 -26.1 NP_064182 5' arm      3' arm
9010 + 56160 90 23 -25.9 5' arm      3' arm
9079 + 98178 87 23 -27.9 NP_064177 5' arm      3' arm
9155 + 153349 90 23 -24.2 5' arm      3' arm
9276 - 72446 88 23 -21.3 NP_064163 5' arm      3' arm
9082 + 101224 88 23 -24.5 NP_064179 5' arm      3' arm
9371 - 187205 88 23 -25.9 NP_064245 5' arm      3' arm
9103 + 112401 89 23 -24 NP_064185 5' arm      3' arm
9116 + 120228 90 23 -20.1 NP_064188 5' arm      3' arm
8974 + 31196 89 23 -24 NP_064140 5' arm      3' arm
9160 + 154793 89 22.5 -20.9 NP_064215 5' arm      3' arm
9032 + 77347 90 22.5 -34.8 5' arm      3' arm
9044 + 81680 90 22.5 -27.1 NP_064165 5' arm      3' arm
9365 - 175938 89 22.5 -19.9 NP_064236 5' arm      3' arm
9317 - 110580 90 22.5 -24.4 NP_064184 5' arm      3' arm
9171 + 188550 89 22.5 -28.6 NP_064246 5' arm      3' arm
9287 - 78158 90 22.5 -22.1 5' arm      3' arm
9137 + 138404 90 22.5 -24.4 NP_064204 5' arm      3' arm
9366 - 178651 89 22.5 -22.1 NP_064238 5' arm      3' arm
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.