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GenBank Identifier | RefSeq Acc. | Name |
20198505 | NC_002512.2 | Murid herpesvirus 2 |
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ID | strand | start position | length | sRNA loop score | core MFE. | NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
9037 | + | 79150 | 90 | 23 | -31.4 | 5' arm 3' arm | |||
9092 | + | 106724 | 90 | 23 | -26.1 | NP_064182 | 5' arm 3' arm | ||
9010 | + | 56160 | 90 | 23 | -25.9 | 5' arm 3' arm | |||
9079 | + | 98178 | 87 | 23 | -27.9 | NP_064177 | 5' arm 3' arm | ||
9155 | + | 153349 | 90 | 23 | -24.2 | 5' arm 3' arm | |||
9276 | - | 72446 | 88 | 23 | -21.3 | NP_064163 | 5' arm 3' arm | ||
9082 | + | 101224 | 88 | 23 | -24.5 | NP_064179 | 5' arm 3' arm | ||
9371 | - | 187205 | 88 | 23 | -25.9 | NP_064245 | 5' arm 3' arm | ||
9103 | + | 112401 | 89 | 23 | -24 | NP_064185 | 5' arm 3' arm | ||
9116 | + | 120228 | 90 | 23 | -20.1 | NP_064188 | 5' arm 3' arm | ||
8974 | + | 31196 | 89 | 23 | -24 | NP_064140 | 5' arm 3' arm | ||
9160 | + | 154793 | 89 | 22.5 | -20.9 | NP_064215 | 5' arm 3' arm | ||
9032 | + | 77347 | 90 | 22.5 | -34.8 | 5' arm 3' arm | |||
9044 | + | 81680 | 90 | 22.5 | -27.1 | NP_064165 | 5' arm 3' arm | ||
9365 | - | 175938 | 89 | 22.5 | -19.9 | NP_064236 | 5' arm 3' arm | ||
9317 | - | 110580 | 90 | 22.5 | -24.4 | NP_064184 | 5' arm 3' arm | ||
9171 | + | 188550 | 89 | 22.5 | -28.6 | NP_064246 | 5' arm 3' arm | ||
9287 | - | 78158 | 90 | 22.5 | -22.1 | 5' arm 3' arm | |||
9137 | + | 138404 | 90 | 22.5 | -24.4 | NP_064204 | 5' arm 3' arm | ||
9366 | - | 178651 | 89 | 22.5 | -22.1 | NP_064238 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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