miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
9630386 NC_001900.1 Mycobacteriophage D29

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
7194 + 22607 89 22.5 -21 NP_046847 5' arm      3' arm
7297 - 13255 83 22.5 -25.8 NP_046833 5' arm      3' arm
7218 + 33674 85 22.5 -30.9 NP_046865 5' arm      3' arm
7162 + 2366 90 22.5 -31.9 NP_046822 5' arm      3' arm
7265 - 3014 89 22.5 -29.71 NP_046823 5' arm      3' arm
7311 - 20820 84 22.5 -31.1 NP_046844 5' arm      3' arm
7258 - 1596 87 22.5 -36.5 NP_046820 5' arm      3' arm
7236 + 42798 89 22.5 -24.4 NP_046883 5' arm      3' arm
7332 - 29433 90 22.5 -27 NP_046860 5' arm      3' arm
7179 + 12795 87 22.5 -23.91 NP_046832 5' arm      3' arm
7342 - 34783 89 22.5 -29.5 NP_046865 5' arm      3' arm
7249 + 48295 89 22.5 -21.1 5' arm      3' arm
7330 - 28904 89 22 -30.3 NP_046857 5' arm      3' arm
7305 - 17124 88 22 -26.3 NP_046842 5' arm      3' arm
7242 + 46171 90 22 -26.3 NP_046891 5' arm      3' arm
7289 - 11302 80 22 -24.7 NP_046830 5' arm      3' arm
7338 - 32559 87 22 -19.9 NP_046863 5' arm      3' arm
7341 - 34332 89 22 -26.1 NP_046865 5' arm      3' arm
7191 + 21230 89 22 -25.3 NP_046844 5' arm      3' arm
7165 + 4449 89 22 -23.5 5' arm      3' arm
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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.