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GenBank Identifier | RefSeq Acc. | Name |
9630386 | NC_001900.1 | Mycobacteriophage D29 |
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ID | strand | start position | length | sRNA loop score | core MFE. | NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
7346 | - | 36914 | 90 | 22 | -24.7 | NP_046870 | 5' arm 3' arm | ||
7224 | + | 37453 | 89 | 19 | -19.5 | NP_046870 | 5' arm 3' arm | ||
7347 | - | 37118 | 90 | 20 | -20.8 | NP_046870 | 5' arm 3' arm | ||
7349 | - | 37399 | 89 | 19 | -23.5 | NP_046870 | 5' arm 3' arm | ||
7348 | - | 37252 | 90 | 21 | -25.5 | NP_046870 | 5' arm 3' arm | ||
7223 | + | 36673 | 89 | 21 | -25 | NP_046869 | 5' arm 3' arm | ||
7222 | + | 35813 | 88 | 20 | -24.5 | NP_046867 | 5' arm 3' arm | ||
7345 | - | 35705 | 90 | 20 | -22 | NP_046866 | 5' arm 3' arm | ||
7221 | + | 35295 | 90 | 19.5 | -22.1 | NP_046865 | 5' arm 3' arm | ||
7219 | + | 34337 | 89 | 20 | -21.6 | NP_046865 | 5' arm 3' arm | ||
7220 | + | 35089 | 88 | 19 | -21.8 | NP_046865 | 5' arm 3' arm | ||
7340 | - | 34059 | 89 | 19 | -22.6 | NP_046865 | 5' arm 3' arm | ||
7218 | + | 33674 | 85 | 22.5 | -30.9 | NP_046865 | 5' arm 3' arm | ||
7343 | - | 35115 | 89 | 19.5 | -20.1 | NP_046865 | 5' arm 3' arm | ||
7341 | - | 34332 | 89 | 22 | -26.1 | NP_046865 | 5' arm 3' arm | ||
7342 | - | 34783 | 89 | 22.5 | -29.5 | NP_046865 | 5' arm 3' arm | ||
7344 | - | 35254 | 86 | 19.5 | -22.9 | NP_046865 | 5' arm 3' arm | ||
7339 | - | 33761 | 90 | 19.5 | -26.8 | NP_046865 | 5' arm 3' arm | ||
7217 | + | 32892 | 89 | 21.5 | -22.2 | NP_046864 | 5' arm 3' arm | ||
7213 | + | 32141 | 87 | 20 | -21.6 | NP_046863 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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