miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
9630386 NC_001900.1 Mycobacteriophage D29

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
7339 - 33761 90 19.5 -26.8 NP_046865 5' arm      3' arm
7181 + 13720 86 19.5 -21.5 NP_046835 5' arm      3' arm
7178 + 12550 87 19.5 -23.9 NP_046832 5' arm      3' arm
7187 + 18412 88 19.5 -20.5 NP_046842 5' arm      3' arm
7344 - 35254 86 19.5 -22.9 NP_046865 5' arm      3' arm
7360 - 42090 90 19.5 -21.3 NP_046882 5' arm      3' arm
7298 - 13414 90 19.5 -22 NP_046834 5' arm      3' arm
7310 - 20212 88 19.5 -25.8 NP_046844 5' arm      3' arm
7336 - 30567 87 19.5 -28.1 NP_046860 5' arm      3' arm
7331 - 28995 87 19.5 -23.4 NP_046857 5' arm      3' arm
7189 + 20807 86 19.5 -22.4 NP_046844 5' arm      3' arm
7343 - 35115 89 19.5 -20.1 NP_046865 5' arm      3' arm
7222 + 35813 88 20 -24.5 NP_046867 5' arm      3' arm
7219 + 34337 89 20 -21.6 NP_046865 5' arm      3' arm
7213 + 32141 87 20 -21.6 NP_046863 5' arm      3' arm
7316 - 22975 90 20 -30.1 NP_046847 5' arm      3' arm
7327 - 28434 90 20 -23.9 NP_046855 5' arm      3' arm
7347 - 37118 90 20 -20.8 NP_046870 5' arm      3' arm
7359 - 41745 84 20 -21.2 NP_046881 5' arm      3' arm
7237 + 43402 90 20 -21.2 NP_046884 5' arm      3' arm
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.