miRNA display CGI

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ID	strand	start position	length	sRNA loop score	core MFE.	NP ORF	Known viral miRNA	Match to own genomic region#	Target prediction with RNAhybrid
1261	+	10910	90	21	-19.5	NP_052265		5' arm      3' arm
1287	-	9607	89	20	-23.1	NP_052262		5' arm      3' arm
1260	+	8193	89	25.5	-21.5	NP_052259		5' arm      3' arm
1286	-	8481	87	19	-24.3	NP_052259		5' arm      3' arm
1285	-	7955	90	22.5	-24.2	NP_052258		5' arm      3' arm
1259	+	6258	85	19	-25.3	NP_052254		5' arm      3' arm
1284	-	6319	86	19.5	-20.1	NP_052254		5' arm      3' arm
1283	-	5955	90	20	-21.5	NP_052254		5' arm      3' arm
1281	-	5107	87	20	-23.6	NP_052253		5' arm      3' arm
1282	-	5659	88	24.5	-23.5	NP_052253		5' arm      3' arm
1280	-	4438	89	21.5	-21.8	NP_052252		5' arm      3' arm
1278	-	2786	89	20	-22.4	NP_052251		5' arm      3' arm
1258	+	3540	85	19	-24.5	NP_052251		5' arm      3' arm
1257	+	3362	90	22.5	-22.6	NP_052251		5' arm      3' arm
1277	-	1654	90	22.5	-19.6	NP_052250		5' arm      3' arm
1256	+	1764	90	19.5	-23.9	NP_052250		5' arm      3' arm
1255	+	1382	89	20.5	-20.7	NP_052250		5' arm      3' arm
1276	-	1275	88	22	-21.1	NP_052250		5' arm      3' arm
1252	+	342	86	20.5	-26.7	NP_052249		5' arm      3' arm
1253	+	844	90	21	-21.8	NP_052249		5' arm      3' arm

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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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