miRNA display CGI

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ID	strand	start position	length	sRNA loop score	core MFE.	NP ORF	Known viral miRNA	Match to own genomic region#	Target prediction with RNAhybrid
1289	-	14772	89	20	-21.4			5' arm      3' arm
1283	-	5955	90	20	-21.5	NP_052254		5' arm      3' arm
1273	+	28755	89	20.5	-25.9	NP_052289		5' arm      3' arm
1255	+	1382	89	20.5	-20.7	NP_052250		5' arm      3' arm
1251	+	150	89	20.5	-23.1			5' arm      3' arm
1252	+	342	86	20.5	-26.7	NP_052249		5' arm      3' arm
1272	+	27360	90	20.5	-26	NP_052289		5' arm      3' arm
1253	+	844	90	21	-21.8	NP_052249		5' arm      3' arm
1261	+	10910	90	21	-19.5	NP_052265		5' arm      3' arm
1275	-	1148	90	21	-24.1	NP_052249		5' arm      3' arm
1274	+	30512	90	21.5	-23.2			5' arm      3' arm
1254	+	955	90	21.5	-22	NP_052249		5' arm      3' arm
1280	-	4438	89	21.5	-21.8	NP_052252		5' arm      3' arm
1290	-	16240	88	22	-22.8	NP_052271		5' arm      3' arm
1263	+	14609	89	22	-28.9	NP_052269		5' arm      3' arm
1276	-	1275	88	22	-21.1	NP_052250		5' arm      3' arm
1277	-	1654	90	22.5	-19.6	NP_052250		5' arm      3' arm
1265	+	15567	89	22.5	-25.8	NP_052270		5' arm      3' arm
1257	+	3362	90	22.5	-22.6	NP_052251		5' arm      3' arm
1285	-	7955	90	22.5	-24.2	NP_052258		5' arm      3' arm

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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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