miRNA display CGI

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ID	strand	start position	length	sRNA loop score	core MFE.	NP ORF	Known viral miRNA	Match to own genomic region#	Target prediction with RNAhybrid
1251	+	150	89	20.5	-23.1			5' arm      3' arm
1272	+	27360	90	20.5	-26	NP_052289		5' arm      3' arm
1252	+	342	86	20.5	-26.7	NP_052249		5' arm      3' arm
1273	+	28755	89	20.5	-25.9	NP_052289		5' arm      3' arm
1255	+	1382	89	20.5	-20.7	NP_052250		5' arm      3' arm
1287	-	9607	89	20	-23.1	NP_052262		5' arm      3' arm
1291	-	16389	87	20	-25.6	NP_052272		5' arm      3' arm
1281	-	5107	87	20	-23.6	NP_052253		5' arm      3' arm
1283	-	5955	90	20	-21.5	NP_052254		5' arm      3' arm
1297	-	28843	88	20	-23.3	NP_052289		5' arm      3' arm
1270	+	24761	90	20	-21.1	NP_052285		5' arm      3' arm
1264	+	15435	90	20	-21.6	NP_052270		5' arm      3' arm
1278	-	2786	89	20	-22.4	NP_052251		5' arm      3' arm
1289	-	14772	89	20	-21.4			5' arm      3' arm
1256	+	1764	90	19.5	-23.9	NP_052250		5' arm      3' arm
1284	-	6319	86	19.5	-20.1	NP_052254		5' arm      3' arm
1292	-	16767	90	19.5	-24.6	NP_052273		5' arm      3' arm
1293	-	17833	90	19.5	-24.12	NP_052273		5' arm      3' arm
1295	-	18875	89	19.5	-24.2	NP_052273		5' arm      3' arm
1279	-	3907	89	19.5	-30			5' arm      3' arm

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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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