miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
9635581 NC_002484.1 Pseudomonas phage D3

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
8923 - 43979 90 22.5 -21.6 5' arm      
8872 + 53594 87 21.5 -19.9 5' arm      3' arm
8840 + 30677 89 21 -31.01 5' arm      3' arm
8836 + 28452 89 27.5 -35.9 5' arm      3' arm
8857 + 40069 86 23.5 -26.1 5' arm      3' arm
8802 + 7095 87 20 -19.8 5' arm      3' arm
8800 + 6666 88 19.5 -19.4 5' arm      3' arm
8831 + 26306 87 25 -19.9 5' arm      3' arm
8807 + 11235 90 21.5 -23 5' arm      3' arm
8844 + 32449 78 21 -21.7 5' arm      3' arm
8871 + 53327 88 20.5 -24.1 5' arm      3' arm
8934 - 53533 84 22.5 -27.9 5' arm      3' arm
8873 + 54177 89 19.5 -22.4 5' arm      3' arm
8888 - 7168 90 23.5 -29.9 5' arm      3' arm
8825 + 18924 89 19.5 -26.4 5' arm      3' arm
8924 - 45266 88 20.5 -23.7 5' arm      3' arm
8916 - 37649 89 19 -22.77 5' arm      3' arm
8876 - 129 90 21 -23.7 NP_061497 5' arm      3' arm
8789 + 799 90 22 -21.4 NP_061498 5' arm      3' arm
8791 + 1438 87 19 -21.9 NP_061498 5' arm      3' arm
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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.