miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
9635581 NC_002484.1 Pseudomonas phage D3

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
8934 - 53533 84 22.5 -27.9 5' arm      3' arm
8919 - 40576 88 20.5 -20.6 NP_061558 5' arm      3' arm
8917 - 38418 90 19 -22.9 NP_061552 5' arm      3' arm
8876 - 129 90 21 -23.7 NP_061497 5' arm      3' arm
8932 - 52152 78 20 -21.7 NP_061578 5' arm      3' arm
8936 - 55393 90 19.5 -21.9 NP_061587 5' arm      3' arm
8929 - 48741 87 21.5 -21.7 NP_061570 5' arm      
8926 - 47422 90 20.5 -33.1 NP_061569 5' arm      3' arm
8923 - 43979 90 22.5 -21.6 5' arm      
8920 - 41295 89 21.5 -25 NP_061559 5' arm      3' arm
8924 - 45266 88 20.5 -23.7 5' arm      3' arm
8928 - 48643 90 19 -20.5 NP_061570 5' arm      3' arm
8931 - 51838 86 22 -25.3 NP_061578 5' arm      3' arm
8922 - 43307 89 20 -24.2 NP_061562 5' arm      3' arm
8935 - 53958 89 21.5 -24.1 NP_061582 5' arm      3' arm
8927 - 47868 85 20 -21 NP_061569 5' arm      3' arm
8921 - 43170 90 19 -21.9 NP_061562 5' arm      3' arm
8918 - 40278 88 20 -19.7 NP_061557 5' arm      
8933 - 52979 90 20 -23.5 NP_061580 5' arm      3' arm
8930 - 49613 86 22 -22.3 NP_061572 5' arm      3' arm
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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.