miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
9635581 NC_002484.1 Pseudomonas phage D3

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
8808 + 11412 90 20 -32.9 NP_061515 5' arm      3' arm
8809 + 11749 89 19.5 -19.5 NP_061515 5' arm      3' arm
8810 + 11883 90 19 -20 NP_061515 5' arm      3' arm
8811 + 12026 88 21 -22.8 NP_061515 5' arm      3' arm
8812 + 12116 87 23.5 -21.2 NP_061515 5' arm      3' arm
8813 + 14417 90 23.5 -24.7 NP_061518 5' arm      3' arm
8814 + 14899 89 20.5 -27.4 NP_061519 5' arm      3' arm
8815 + 15539 90 20.5 -27.6 NP_061521 5' arm      3' arm
8816 + 15727 89 20.5 -19.7 NP_061521 5' arm      3' arm
8817 + 16325 84 21 -22.2 NP_061522 5' arm      3' arm
8818 + 16512 89 22 -24.1 NP_061522 5' arm      3' arm
8819 + 16710 90 21 -20.4 NP_061522 5' arm      3' arm
8820 + 16801 87 19.5 -22.2 NP_061522 5' arm      3' arm
8821 + 16910 82 19.5 -22.2 NP_061522 5' arm      3' arm
8822 + 17266 90 20 -21.7 NP_061522 5' arm      3' arm
8823 + 17499 88 19 -26.8 NP_061522 5' arm      3' arm
8824 + 17718 90 22.5 -22.3 NP_061522 5' arm      3' arm
8825 + 18924 89 19.5 -26.4 5' arm      3' arm
8826 + 19351 89 20.5 -20.4 NP_061523 5' arm      3' arm
8827 + 19517 85 19 -22.8 NP_061523 5' arm      3' arm
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.