miRNA display CGI

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ID	strand	start position	length	sRNA loop score	core MFE.	NP ORF	Known viral miRNA	Match to own genomic region#	Target prediction with RNAhybrid
32342	-	17874	86	19.5	-23.2	YP_239291		5' arm      3' arm
32341	-	12026	90	25	-24.1	YP_239284		5' arm      3' arm
32340	-	9752	89	24	-19.7	YP_239279		5' arm      3' arm
32339	-	8685	90	24	-22.9	YP_239278		3' arm
32338	-	8554	85	19.5	-19.8	YP_239278		5' arm      3' arm
32337	-	8234	88	19.5	-23.7			5' arm
32336	-	3938	77	21	-24	YP_239273		5' arm      3' arm
32335	-	3259	90	22	-21.4	YP_239272		5' arm      3' arm
32334	-	3085	89	19.5	-20	YP_239272		5' arm      3' arm
32333	-	2603	88	20.5	-19.7	YP_239272		5' arm
32332	-	2353	90	20	-23.3	YP_239272		5' arm      3' arm
32331	+	55196	84	19.5	-20.4			5' arm      3' arm
32330	+	47258	85	23.5	-22.8	YP_239326		5' arm      3' arm
32329	+	46327	87	22	-22.1	YP_239324		5' arm      3' arm
32328	+	43281	89	21	-28.4			5' arm      3' arm
32327	+	43035	90	20	-25.9	YP_239316		5' arm      3' arm
32326	+	42621	90	22.5	-22.4	YP_239316		5' arm      3' arm
32325	+	40375	90	23	-21.5	YP_239315		5' arm      3' arm
32324	+	37320	89	25.5	-31.7			5' arm      3' arm
32323	+	34974	89	24.5	-34.7			5' arm      3' arm

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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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