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GenBank Identifier | RefSeq Acc. | Name |
66392052 | NC_007024.1 | Xanthomonas campestris pv. pelargonii phage Xp15 |
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ID | strand | start position | length | sRNA loop score | core MFE. | NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
32316 | + | 25530 | 90 | 22.5 | -25.6 | YP_239297 | 5' arm 3' arm | ||
32350 | - | 31456 | 86 | 19.5 | -25.4 | 5' arm 3' arm | |||
32301 | + | 8166 | 88 | 19.5 | -25.4 | 5' arm 3' arm | |||
32349 | - | 28921 | 90 | 22.5 | -24.6 | YP_239301 | 5' arm 3' arm | ||
32309 | + | 17095 | 89 | 22 | -24.6 | YP_239289 | 5' arm 3' arm | ||
32298 | + | 3855 | 90 | 20.5 | -24.2 | YP_239273 | 5' arm 3' arm | ||
32341 | - | 12026 | 90 | 25 | -24.1 | YP_239284 | 5' arm 3' arm | ||
32336 | - | 3938 | 77 | 21 | -24 | YP_239273 | 5' arm 3' arm | ||
32352 | - | 35586 | 89 | 23.5 | -23.9 | YP_239310 | |||
32300 | + | 7123 | 84 | 21 | -23.7 | YP_239276 | 5' arm 3' arm | ||
32337 | - | 8234 | 88 | 19.5 | -23.7 | 5' arm | |||
32304 | + | 9082 | 89 | 19 | -23.6 | YP_239278 | 5' arm 3' arm | ||
32360 | - | 51382 | 85 | 22 | -23.5 | YP_239339 | 5' arm 3' arm | ||
32343 | - | 19043 | 85 | 23.5 | -23.4 | YP_239291 | 3' arm | ||
32332 | - | 2353 | 90 | 20 | -23.3 | YP_239272 | 5' arm 3' arm | ||
32342 | - | 17874 | 86 | 19.5 | -23.2 | YP_239291 | 5' arm 3' arm | ||
32297 | + | 2107 | 89 | 19 | -23.2 | 5' arm 3' arm | |||
32339 | - | 8685 | 90 | 24 | -22.9 | YP_239278 | 3' arm | ||
32330 | + | 47258 | 85 | 23.5 | -22.8 | YP_239326 | 5' arm 3' arm | ||
32313 | + | 22003 | 88 | 21.5 | -22.6 | YP_239292 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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