miRNA display CGI

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ID	strand	start position	length	sRNA loop score	core MFE.	NP ORF	Known viral miRNA	Match to own genomic region#	Target prediction with RNAhybrid
32355	-	43369	89	21	-31.7			5' arm      3' arm
32336	-	3938	77	21	-24	YP_239273		5' arm      3' arm
32343	-	19043	85	23.5	-23.4	YP_239291		3' arm
32356	-	43680	88	21.5	-20.7	YP_239317		3' arm
32339	-	8685	90	24	-22.9	YP_239278		3' arm
32333	-	2603	88	20.5	-19.7	YP_239272		5' arm
32335	-	3259	90	22	-21.4	YP_239272		5' arm      3' arm
32357	-	46415	89	20	-19.7	YP_239324		5' arm      3' arm
32358	-	47342	85	20.5	-28.9	YP_239326		5' arm      3' arm
32353	-	40176	86	22.5	-29.1	YP_239314		5' arm      3' arm
32347	-	25619	88	20.5	-19.41	YP_239297		5' arm      3' arm
32303	+	8695	90	20.5	-19.6	YP_239278		5' arm      3' arm
32324	+	37320	89	25.5	-31.7			5' arm      3' arm
32322	+	34244	89	19.5	-21	YP_239308		5' arm      3' arm
32320	+	33405	90	19.5	-30.1	YP_239307		5' arm      3' arm
32321	+	33927	86	22.5	-26.5	YP_239308		5' arm      3' arm
32323	+	34974	89	24.5	-34.7			5' arm      3' arm
32311	+	17872	90	23	-25.7	YP_239291		5' arm      3' arm
32309	+	17095	89	22	-24.6	YP_239289		5' arm      3' arm
32310	+	17731	85	21	-20.1	YP_239291		5' arm      3' arm

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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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