miRNA display CGI

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ID	strand	start position	length	sRNA loop score	core MFE.	NP ORF	Known viral miRNA	Match to own genomic region#	Target prediction with RNAhybrid
6148	-	118091	78	19.5	-20.5	NP_044918		5' arm      3' arm
6122	+	107597	86	24	-21.7	NP_044915		5' arm      3' arm
6147	-	106538	89	19.5	-20.5	NP_044915		5' arm      3' arm
6121	+	104676	90	22.5	-25.7	NP_044913		5' arm      3' arm
6144	-	98179	90	20.5	-21.6	NP_044907		5' arm      3' arm
6143	-	94228	89	22.5	-19.7	NP_044903		5' arm      3' arm
6142	-	93668	88	23	-21.8	NP_044902		5' arm      3' arm
6141	-	87648	89	21	-21.7	NP_044902		5' arm      3' arm
6120	+	82107	77	19.5	-19.4	NP_044899		5' arm      3' arm
6140	-	82809	86	19.5	-28.2	NP_044899		5' arm      3' arm
6119	+	78962	90	21.5	-22	NP_044897		5' arm      3' arm
6139	-	78259	79	19.5	-27.4	NP_044896		5' arm      3' arm
6118	+	74301	86	20.5	-20.5	NP_044893		5' arm      3' arm
6138	-	70803	87	24.5	-20.2	NP_044888		5' arm      3' arm
6137	-	69875	90	19	-20.91	NP_044888		5' arm      3' arm
6136	-	69778	78	23	-27.7	NP_044888		5' arm      3' arm
6117	+	50200	87	24	-20.7	NP_044870		5' arm      3' arm
6135	-	41868	88	19	-22.7	NP_044863		5' arm      3' arm
6133	-	33418	89	20	-22.3	NP_044859		5' arm      3' arm
6134	-	33555	88	20	-21.5	NP_044859		5' arm      3' arm

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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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