miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
18138397 NC_003345.1 Halovirus HF2

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
12526 + 16839 90 20.5 -29.7 NP_542527 5' arm      3' arm
12527 + 18655 88 22 -30.6 NP_542529 5' arm      3' arm
12528 + 19698 89 23 -22 NP_542531 5' arm      3' arm
12529 + 20033 89 19.5 -25.9 NP_542531 5' arm      3' arm
12530 + 22189 90 19.5 -29.3 NP_542535 5' arm      3' arm
12531 + 22442 90 21 -26.2 NP_542536 5' arm      3' arm
12532 + 22892 88 19 -19.6 NP_542536 5' arm      3' arm
12533 + 24174 87 23.5 -27.7 NP_542537 5' arm      3' arm
12534 + 24458 83 20 -25.2 NP_542537 5' arm      3' arm
12535 + 25624 90 20 -24.5 NP_542538 5' arm      3' arm
12536 + 28312 90 21 -29.2 NP_542546 5' arm      3' arm
12537 + 28455 90 20.5 -20.1 NP_542546 5' arm      3' arm
12538 + 28713 85 20 -25.4 NP_542546 5' arm      3' arm
12539 + 29037 83 19 -21.6 NP_542546 5' arm      3' arm
12540 + 30601 90 19.5 -24.2 NP_542551 5' arm      3' arm
12541 + 31140 89 20 -30.6 5' arm      3' arm
12542 + 31573 77 20 -27.3 NP_542552 5' arm      3' arm
12543 + 32264 87 20 -23.2 NP_542554 5' arm      3' arm
12544 + 33249 90 19.5 -22.8 NP_542554 5' arm      3' arm
12545 + 33363 89 22 -29.1 NP_542554 5' arm      3' arm
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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.