miRNA display CGI

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ID	strand	start position	length	sRNA loop score	core MFE.	NP ORF	Known viral miRNA	Match to own genomic region#	Target prediction with RNAhybrid
12573	+	67733	84	19.5	-28.8	NP_542593		5' arm      3' arm
12522	+	14962	90	21	-28.5	NP_542524		5' arm      3' arm
12608	-	24456	90	21	-28.4	NP_542537		5' arm      3' arm
12566	+	59073	88	20	-28.1	NP_542584		5' arm      3' arm
12589	-	5058	90	20	-28.1			5' arm      3' arm
12533	+	24174	87	23.5	-27.7	NP_542537		5' arm      3' arm
12572	+	66250	86	21	-27.4	NP_542592		5' arm      3' arm
12614	-	28799	89	23	-27.4	NP_542546		5' arm      3' arm
12542	+	31573	77	20	-27.3	NP_542552		5' arm      3' arm
12585	-	2559	88	20	-27.1	NP_542495		5' arm      3' arm
12590	-	6825	89	22	-27	NP_542509		5' arm      3' arm
12568	+	62501	88	19	-26.9	NP_542589		5' arm      3' arm
12606	-	23733	90	20	-26.7	NP_542536		5' arm      3' arm
12592	-	8135	88	23.5	-26.7	NP_542511		5' arm      3' arm
12629	-	40858	87	20	-26.6			5' arm      3' arm
12520	+	14427	88	19	-26.5			5' arm      3' arm
12645	-	54293	89	20.5	-26.5	NP_542578		5' arm      3' arm
12647	-	55076	90	20.5	-26.5	NP_542580		5' arm      3' arm
12563	+	47340	90	19.5	-26.3	NP_542569		5' arm      3' arm
12531	+	22442	90	21	-26.2	NP_542536		5' arm      3' arm

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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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