miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
10140926 NC_002531.1 Alcelaphine herpesvirus 1

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
9494 - 62096 89 23.5 -19.7 NP_065537 5' arm      3' arm
9493 - 61180 89 20.5 -24.4 NP_065536 5' arm      3' arm
9492 - 60449 89 22 -30 NP_065535 5' arm      3' arm
9491 - 58426 89 20.5 -32.6 NP_065533 5' arm      3' arm
9490 - 57343 88 21.5 -31.5 5' arm      3' arm
9489 - 57225 90 19.5 -23.3 NP_065532 5' arm      3' arm
9488 - 55228 88 24.5 -30.8 NP_065531 5' arm      3' arm
9487 - 50701 80 24 -26.8 NP_065525 5' arm      3' arm
9486 - 47105 90 24 -26.6 NP_065524 5' arm      3' arm
9485 - 32409 90 25 -31.1 5' arm      3' arm
9484 - 30365 89 22.5 -25 5' arm      3' arm
9483 - 30270 85 20.5 -26.6 5' arm      3' arm
9482 - 30106 89 24.5 -26.4 5' arm      3' arm
9481 - 29945 89 27 -24.7 5' arm      3' arm
9480 - 29378 89 26.5 -22.9 5' arm      3' arm
9479 - 29253 86 23.5 -26.2 5' arm      3' arm
9478 - 28912 89 29 -20.9 5' arm      3' arm
9477 - 28281 90 30 -26.2 5' arm      3' arm
9476 - 28159 88 34.5 -32.6 5' arm      3' arm
9475 - 28022 89 26.5 -22.2 5' arm      3' arm
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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.