miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
10140926 NC_002531.1 Alcelaphine herpesvirus 1

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
9445 + 94723 88 20 -26.9 NP_065562 5' arm      3' arm
9506 - 92405 86 21 -22.6 NP_065561 5' arm      3' arm
9444 + 91045 88 20 -29.8 NP_065560 5' arm      3' arm
9503 - 90253 90 20 -21.5 NP_065560 5' arm      3' arm
9504 - 90413 88 22.5 -26.7 NP_065560 5' arm      3' arm
9505 - 90728 88 23.5 -26.6 NP_065560 5' arm      3' arm
9443 + 88742 90 20 -22.9 NP_065559 5' arm      3' arm
9502 - 84744 90 21.5 -22.9 NP_065556 5' arm      3' arm
9501 - 82749 89 22.5 -22.6 NP_065555 5' arm      3' arm
9499 - 78213 87 20 -20.9 NP_065550 5' arm      3' arm
9500 - 78327 87 19 -22.8 NP_065550 5' arm      3' arm
9498 - 77971 82 19 -21.1 NP_065550 5' arm      3' arm
9497 - 70590 88 19 -22.4 NP_065544 5' arm      3' arm
9442 + 69336 90 22 -25.5 NP_065543 5' arm      3' arm
9441 + 67403 87 21 -24.9 NP_065542 5' arm      3' arm
9496 - 69130 89 25.5 -27.7 NP_065542 5' arm      3' arm
9495 - 64420 89 20 -23.8 NP_065539 5' arm      3' arm
9440 + 62902 90 20 -22.5 NP_065538 5' arm      3' arm
9494 - 62096 89 23.5 -19.7 NP_065537 5' arm      3' arm
9439 + 61846 89 20 -21.8 NP_065537 5' arm      3' arm
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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.